KEGG   Caenorhabditis remanei (nematode): GCK72_014018
Entry
GCK72_014018      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03018  RNA degradation
crq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GCK72_014018
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCK72_014018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_014018
   03041 Spliceosome [BR:crq03041]
    GCK72_014018
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GCK72_014018
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GCK72_014018
Spliceosome [BR:crq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GCK72_014018
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 9828580
NCBI-ProteinID: XP_003107822
UniProt: E3M7K2
LinkDB
Position
IV:14334845..14335772
AA seq 103 aa
MSKDDGKRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQ
NPSVVGDETRPLGLIVARGTAITVVSPADGLEQIANPFAAQDE
NT seq 312 nt   +upstreamnt  +downstreamnt
atgtcgaaggacgatggaaagcgaaagaaggagtcggtcgtcgatctcaccagatttctc
gacaaagaaattcgcgtcaagtttcaaggaggacgtgaagcaagtggagtgctccgagga
ttcgatcaacttctcaacatggttcttgacgactgccgtgagtatcttcgcgatccgcag
aatccatcagttgttggcgatgaaacaagaccactcggactcatcgtagcacgcggaacc
gccatcacagttgtcagcccagccgatggattggagcagattgctaatccatttgcggct
caagacgaatag

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