Caenorhabditis remanei (nematode): GCK72_014018
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Entry
GCK72_014018 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03018
RNA degradation
crq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GCK72_014018
09123 Folding, sorting and degradation
03018 RNA degradation
GCK72_014018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_014018
03041 Spliceosome [BR:
crq03041
]
GCK72_014018
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GCK72_014018
mRNA degradation factors
5'-3' decay
Lsm complex
GCK72_014018
Spliceosome [BR:
crq03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GCK72_014018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
9828580
NCBI-ProteinID:
XP_003107822
UniProt:
E3M7K2
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All DBs
Position
IV:14334845..14335772
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AA seq
103 aa
AA seq
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MSKDDGKRKKESVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQ
NPSVVGDETRPLGLIVARGTAITVVSPADGLEQIANPFAAQDE
NT seq
312 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggacgatggaaagcgaaagaaggagtcggtcgtcgatctcaccagatttctc
gacaaagaaattcgcgtcaagtttcaaggaggacgtgaagcaagtggagtgctccgagga
ttcgatcaacttctcaacatggttcttgacgactgccgtgagtatcttcgcgatccgcag
aatccatcagttgttggcgatgaaacaagaccactcggactcatcgtagcacgcggaacc
gccatcacagttgtcagcccagccgatggattggagcagattgctaatccatttgcggct
caagacgaatag
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