Caenorhabditis remanei (nematode): GCK72_014230
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Entry
GCK72_014230 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
GCK72_014230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crq03021
]
GCK72_014230
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_014230
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
GCK72_014230
RNA polymerase I system
GCK72_014230
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
GCK72_014230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTD
KOW5_SPT5
KOWx_SPT5
KOW4_SPT5
KOW6_SPT5
KOW
KOW7_SPT5
DUF4744
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
9815591
NCBI-ProteinID:
XP_003100804
UniProt:
A0A6A5GSY3
E3MSV9
LinkDB
All DBs
Position
IV:15134312..15136552
Genome browser
AA seq
698 aa
AA seq
DB search
MEELQVRVRDLQLCADVTTGVDSLGQFQFHDLVQLDHTGNVGVIIRLKKENLEVLNMHGV
VSRIKPQAIIAKKDVRFAKVLDSQNNSIEAKDLVKVISGLNIKERESDEDPVGEVLYAFR
GTVFIYARKIAKNGGVMVCRPKQLLLQGAKKANNAPMISRMASPNPMASPRHSSSGMTSS
SHDGMSSRGSTGGQTPRQNQPRHFGTANQQKVRRDLTIIGKNVRITKGPMKGHFGIVRDA
TEDTVRVELHAQCRTVSVDRARMMVVGDTGITSSGSGTSFYNTAKTPMRDSSKTPMYGSK
TPMYGAQTPMYGAMTPHAGDRTPHYGAMTPAYGGRTPAYGDGSRTPAYGSKTPAYGDLDE
HSSARTPAYGNDNGRTPAYGHDSGRTPAYGNSENGRTPAYGGSTDSGRTPAYDHDSGRTP
GYESLPSRTPNYDSSKTPSYTNDFDTPTSPTYDPEPNEPYNNAPARTPAFDSGRTPGYET
YDSGSPTYDPEPTGETEDIGDTSSPTYDSPPHSYSVPTPGAMINPATPGAYHVDTPGPFV
APMTPGSGGAYDQYVAPSPYMGGGFEANNFNNAGGAIESIPEHFLVQGHWIMSNLYVVIK
EHDPRYNDREAIVQNVNDGKVDIYIPDLKCNLEVDFDQLSPTRPQPGDFARVIFGHDGGH
SGQVVSMDGVDALIRSQSDISDMRSCNIGLCCKMHGGV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaagaactccaagtacgcgtccgagatctacaactttgtgctgatgtgacaactgga
gtggattctctcgggcaattccaattccacgatctcgtacaactcgatcatactggaaat
gtcggagttatcattcgtttgaagaaggagaatcttgaagttcttaatatgcatggagta
gtgagccgaataaaaccgcaagcaatcatcgcgaaaaaagatgtgagatttgcaaaggtc
ctcgacagtcagaacaactcaattgaagctaaagatcttgtgaaagtaatcagtggtttg
aacatcaaagaaagagaatctgatgaggatccggtaggagaagtactttatgcattcaga
ggaaccgtgttcatttacgcccgtaaaattgctaagaacggaggagttatggtctgtaga
ccgaaacaattgcttctccaaggagctaaaaaggctaacaatgctccaatgatatctcga
atggcctctcctaatccgatggcatctccacgacatagttcctctggaatgacgtccagc
agccacgacggtatgtcgagtcgaggaagtactggcggtcagacaccaagacagaatcag
cctcgacactttggaactgctaatcaacaaaaagttcgtcgggatttgaccattattggt
aaaaatgttcgcatcacaaaaggccctatgaaaggacatttcggaatcgttcgtgatgct
accgaagatacagttcgagttgaactgcatgctcaatgcagaacagtttcagtagaccga
gcacgtatgatggtggtcggagataccggaattacaagttcaggaagtggcacctcgttc
tacaataccgctaagactccaatgcgtgattcaagtaaaactccgatgtacggttcaaag
actccaatgtacggagctcaaactccaatgtacggtgcaatgactccacatgctggagac
agaactccacattacggcgcaatgactccagcttatggaggaagaactccagcatatgga
gatggaagtcgtactcccgcatacggaagcaagacacctgcttatggagatcttgacgag
cattcttcggctcgaactcctgcatatggaaatgacaatggaagaactccagcctatggg
catgatagtggaagaactccagcttatggaaacagtgaaaacggtcgcactcctgcatac
ggcggctctactgatagtggaagaactcctgcatacgatcacgactctggaaggacacct
ggatatgaaagtctcccgtcaagaacaccaaattatgactcgagcaaaacaccatcatac
actaatgattttgataccccaacgagtccaacatatgatcctgagccaaatgaaccttac
aataatgcaccagcaagaacaccagcgtttgattctggtcgtactccaggttatgaaacg
tatgacagtggcagccctacttatgatccagaacctaccggcgaaactgaagatattggg
gatacatcatcaccgacctacgattctcctccccactcgtattctgttccaactccaggt
gctatgataaacccagcaacgccaggggcttatcacgttgatactccggggccatttgtt
gctccaatgactcctggaagtggaggagcttacgatcagtacgtggctccatcgccatat
atggggggaggttttgaagcgaacaacttcaataatgcgggaggcgcgattgagtccatt
cctgaacactttttggttcaaggacattggattatgtcgaatctttacgttgtcatcaag
gaacatgacccccggtataatgaccgtgaggccatcgttcaaaatgtcaatgatggaaaa
gtggatatttacattccggacctcaaatgtaatctggaagtagacttcgatcagctctct
cccaccagacctcagccgggagatttcgctcgtgttatcttcggacacgatggtggacac
agtggacaggttgtgtcaatggatggagttgatgcactcattcggtcacagtccgatatc
tccgacatgcgaagctgcaacattggactgtgctgcaagatgcatggtggagtctga
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