KEGG   Caenorhabditis remanei (nematode): GCK72_014274
Entry
GCK72_014274      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K20178  vacuolar protein sorting-associated protein 8
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:crq00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    GCK72_014274
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:crq04131]
    GCK72_014274
Membrane trafficking [BR:crq04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    GCK72_014274
SSDB
Motif
Pfam: TPR_Vps8 Beta-prop_VPS8 Beta-prop_EML_2 Beta-prop_NUP159_NUP214 ANAPC4_WD40 Beta-prop_Vps41 Beta-prop_HPS5 WD40_CDC20-Fz WD40_WDHD1_1st RMC1_N Beta-prop_RSE1_2nd Beta-prop_IFT140_2nd DUF445 KIP1 WD40_Prp19 Mcl1_mid DUF6476
Other DBs
NCBI-GeneID: 9815607
NCBI-ProteinID: XP_053584990
UniProt: A0A6A5GRK2
LinkDB
Position
IV:complement(15286587..15292106)
AA seq 1359 aa
MSTSGSLEKEDWLDLGDLNNAANFTLDDALNDTESLNDPLLDEQFLFDGDFGSVSNLEDS
APTSDNQPLVYKLDASFVIQPHQLISNQILKNEKKSGRVIAVAERNGWIAVVTSKGQLHL
FDLNGNLNQFHRGDETMGGASCVTFSLDGKYLAIGLQKGAIKIMTIDNKLYHIINEGGQP
GQGIVQVLYTKDNHTVLTIDNGGSFYECKINRQWLQKRKDSLRCHVSGCNGEIVAMKLLP
GDVIALLSVHKLIFYVIKPRGGQILGVFPTKYEFQFPPACSYWLGCPKSDNNNSSSPLNS
LYTSELRDFRICISRGHKISVLRLHANNFFSKKRRATVINQFDVPSPLVNLHWMSTHVVA
GIDAMGAVWLIDPEKKTAKKQELEDLQLIFSTPILKGSATGGKVSEAVKAVAEYACYQSV
TSATSTSERFIVLAHDGLKYLEKVHEWQQLESYKERNDDISAALYLLDVCRDKVRASEEF
KRESRNLLAEKTSKLLTETVSGIVGGPLSDLQSHYRKYIRVILKVCVTGGLLEFLYTTCW
DRLSMDSISKTVFLEHLDEYVLDGALIDPPTPLVNEYLQHLASEGHFSQFQSAVVRFPIH
TLDLHTVMSICKQNSIYDGIIYVNNKALNDYITPLEDMLAEMSEFAHRGVFSDSEQILGN
KVLVYLNCCLAGMAYPFGQLDGDNQKRVPLETFRCLSSIRGKEEKESEEQYPYLKLLLQF
DPQQFLNVVSTCADVELFQLDNRLQRFVDTIGQVCVNMKCELSLIHYLALLVQLSERALI
ALPSEPIQDAVITLLKMSPWDQIGTEDAILGGLYHATPDDKRRIIRAAQNPMRPVILSFL
YLSDRKFEELIKCYLDSENKEVYSVIGGILKGGELTVQESAELRSYIMSIMETLYRIDGW
LCANLINDHFREVIVTMAENEEEKRKQVFPVLAGIAQLRKYANQPSFCNDNELDEKLFGI
VFEGICKRWPSWMPTSENPESVDHQLISMFPFWLPLAANTDSCLNIAVGNEYCVRTVVRL
LEARHHLERAFDLLFEQLEKNKENDERMAEWLDETMKFCSRQSTKDDNSDRMMRVFQFIS
KRAAQVGEDSEKQAKIDESLRVMCRQILATGTRYAKQLVDQLLDSPSFSGSSFIDNGGLI
MDILSSCDYEAEIYQEMIYLIREENLTFAQKLELEVSRRAPLMYNSQCITCEQPMNKSGY
VFRYEDYPNVAPFLAVENFVSFPVYSPTFCFSTSAIDNIMFMQKIKTILARLDDLISRNK
LHEHPCLISQAGAQATMRLASKFKLRSDWGAAVEMPFCLHVTENGSCPRTYDYDDLYQQV
QWLMILEEVILPLDNMEDNELSTIAPHQHSTIVKNAIMV
NT seq 4080 nt   +upstreamnt  +downstreamnt
atgagcacttctgggtcattagaaaaagaagactggcttgatttaggggacctcaacaac
gctgctaattttactttagatgatgcactgaatgatacagaaagtctaaacgatccatta
ttagatgaacaatttttatttgacggagattttgggtctgtatctaatttggaagattcc
gcacccacttctgataatcagccgctagtctataagcttgatgcatcctttgttatacaa
ccacatcaattaatctctaatcaaattcttaaaaatgagaagaaatcaggacgagtgata
gctgtggctgaaagaaacggatggattgcagttgttactagcaaaggacaactacattta
ttcgatttgaacgggaatctcaaccaatttcatcgaggcgatgagacaatgggcggagct
agttgtgtcacgttttcattagatggaaagtatcttgcgattggactgcaaaaaggagct
atcaagattatgacaattgataacaaactctaccatattatcaatgaaggcggtcaacca
ggccaaggaattgttcaagttctctatacaaaagacaatcatactgtgctcactatcgac
aatggaggaagtttttatgaatgcaaaataaacagacagtggctccagaaaagaaaggat
agtttgagatgccatgtatccggatgcaatggagaaatcgtagcaatgaaattactacca
ggagatgtgattgctcttctgtccgtccacaagctcattttttatgttataaagcctcga
ggaggacaaattctcggtgttttccccacgaagtatgaatttcaattccctccagcttgt
tcttactggttaggatgtccgaaatccgataataataattcaagttcacctctgaattca
ctctatacatcagaactgagagacttcagaatttgcatcagtagagggcacaagatttca
gttctcagattacatgctaataatttcttctcaaaaaagagacgagctacagtaatcaac
caatttgatgtgccttccccactagtgaaccttcactggatgagtactcatgttgttgcc
ggtattgatgcaatgggagctgtttggctaatcgatccagagaagaaaactgcaaagaaa
caggagttggaagatcttcaactcatattttctacaccgattcttaaaggatctgcaaca
ggaggaaaagtcagtgaagcagtgaaagctgttgcagaatacgcatgttatcagtcggtt
acttcggctacttcaacttcagaacgatttatcgtgttggcgcatgatggattgaagtac
cttgaaaaagttcacgaatggcaacaactagagagctataaagaacgtaatgacgacatt
tctgctgcgctctatcttctagacgtatgtagagataaagtgagagcaagtgaagaattc
aaaagagaatcacgtaatctactagccgaaaaaacatctaaactacttactgaaaccgtt
tctggaatcgttggaggacccttgtcagacctacaatctcattaccgaaaatatattcgg
gtaattttgaaagtttgtgtaactggtggacttctcgagtttttgtatactacgtgctgg
gatcgattgagtatggactctatttctaagacggttttcctcgaacatttagatgaatac
gtactggatggtgctctaattgatccaccaactccactcgtcaacgaatatctacaacat
ttagcatccgaagggcacttttcgcaatttcagtcagcagttgtccgttttccaattcat
actcttgatcttcacactgtcatgtctatttgtaagcaaaattccatatacgacggaata
atatatgtaaataacaaagctctcaatgactatataacgcctctcgaggacatgctagct
gaaatgtcggaattcgctcacagaggagtgttttcggacagtgagcagatcctcggtaac
aaagttcttgtctatttgaattgttgtctagctggaatggcctacccatttggtcaactt
gatggcgataatcagaaaagggttccattagaaacatttcgttgcttaagttcaataaga
gggaaagaagagaaagaatcagaagaacagtacccatatttgaagttgctactgcagttt
gatccacaacaatttttgaatgtcgttagtacctgtgcagatgtagaactcttccaattg
gacaacaggctgcaacgttttgtggatacaattgggcaagtttgtgtaaacatgaaatgc
gaactttcacttattcattaccttgctcttttggtgcaactctctgaacgagcgttgata
gctttaccctctgagcctatacaggatgcagtgatcacactactcaaaatgtctccatgg
gatcagattggcacggaagatgccattttgggtggcttgtatcacgcaacacccgacgat
aaaagaagaattatccgggctgctcagaatccaatgcgtccagtcattctgagttttctt
tatttgtcggatcgaaagtttgaagagttgatcaaatgttatttggattcagagaacaaa
gaagtttattctgtaatcggtggaattttgaaaggtggtgaactgactgtccaggaatct
gcggaactcagaagttatattatgagtattatggagaccttgtatcgaatcgatggatgg
ttatgtgctaatctgataaatgatcacttcagagaagtaattgttacaatggctgagaat
gaagaggaaaaaaggaaacaagtatttcctgtactggctggaattgcacaacttagaaag
tatgcaaaccaaccatcgttttgcaatgacaatgagctggatgagaagcttttcgggatt
gtttttgaaggaatctgcaaaaggtggcctagttggatgccaacttcagaaaatccagaa
tctgttgaccatcagctcatttcgatgttcccattttggcttccacttgctgcaaataca
gattcttgtttgaatatagctgttgggaatgaatattgcgtccgtacagttgtcagactt
cttgaagcaagacaccatttggaaagagccttcgatctccttttcgagcaacttgaaaaa
aacaaggaaaatgatgaaagaatggcagaatggcttgacgaaaccatgaaattttgctct
cgacagtcaacaaaagatgacaacagtgatcgcatgatgcgagttttccagttcatttcg
aaacgagctgcacaagttggagaggattctgaaaaacaagcaaaaattgacgaaagcttg
cgagtaatgtgtagacaaattcttgctaccggtaccagatacgcgaagcaactcgtcgat
caattattggatagtccttcgttttctgggtctagtttcatagataatggtggcctgata
atggatatactatcttcgtgtgactatgaagctgaaatatatcaagaaatgatatacttg
attagagaagaaaaccttacgttcgctcagaaactcgagctagaagtgagcagaagagcc
cctttgatgtacaactcccagtgtatcacatgtgaacagcctatgaacaaaagtggatat
gttttccggtacgaagactacccgaatgttgcaccatttctagctgtggaaaactttgta
tcttttccggtttattcacctacattttgtttttctacatctgcgattgataatattatg
ttcatgcagaagatcaagacaatactggctcgtctggatgatctgatttcgcggaacaaa
ctgcatgaacatccttgtctgatttctcaagcaggtgcacaggccacaatgcgtcttgca
tcaaaattcaaacttcgtagtgattggggtgcagctgtcgaaatgcctttttgcttacat
gtcacggagaatggatcatgtcctcgaacgtatgattatgatgacttgtatcaacaggtt
caatggctgatgattctcgaagaagtcatcttaccactagataacatggaagataatgaa
ctttctacgattgctcctcatcaacacagtacaattgttaaaaacgcgattatggtttga

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