Caenorhabditis remanei (nematode): GCK72_014274
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Entry
GCK72_014274 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
GCK72_014274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
crq04131
]
GCK72_014274
Membrane trafficking [BR:
crq04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
GCK72_014274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
Beta-prop_EML_2
Beta-prop_NUP159_NUP214
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_WDHD1_1st
RMC1_N
Beta-prop_RSE1_2nd
Beta-prop_IFT140_2nd
DUF445
KIP1
WD40_Prp19
Mcl1_mid
DUF6476
Motif
Other DBs
NCBI-GeneID:
9815607
NCBI-ProteinID:
XP_053584990
UniProt:
A0A6A5GRK2
LinkDB
All DBs
Position
IV:complement(15286587..15292106)
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AA seq
1359 aa
AA seq
DB search
MSTSGSLEKEDWLDLGDLNNAANFTLDDALNDTESLNDPLLDEQFLFDGDFGSVSNLEDS
APTSDNQPLVYKLDASFVIQPHQLISNQILKNEKKSGRVIAVAERNGWIAVVTSKGQLHL
FDLNGNLNQFHRGDETMGGASCVTFSLDGKYLAIGLQKGAIKIMTIDNKLYHIINEGGQP
GQGIVQVLYTKDNHTVLTIDNGGSFYECKINRQWLQKRKDSLRCHVSGCNGEIVAMKLLP
GDVIALLSVHKLIFYVIKPRGGQILGVFPTKYEFQFPPACSYWLGCPKSDNNNSSSPLNS
LYTSELRDFRICISRGHKISVLRLHANNFFSKKRRATVINQFDVPSPLVNLHWMSTHVVA
GIDAMGAVWLIDPEKKTAKKQELEDLQLIFSTPILKGSATGGKVSEAVKAVAEYACYQSV
TSATSTSERFIVLAHDGLKYLEKVHEWQQLESYKERNDDISAALYLLDVCRDKVRASEEF
KRESRNLLAEKTSKLLTETVSGIVGGPLSDLQSHYRKYIRVILKVCVTGGLLEFLYTTCW
DRLSMDSISKTVFLEHLDEYVLDGALIDPPTPLVNEYLQHLASEGHFSQFQSAVVRFPIH
TLDLHTVMSICKQNSIYDGIIYVNNKALNDYITPLEDMLAEMSEFAHRGVFSDSEQILGN
KVLVYLNCCLAGMAYPFGQLDGDNQKRVPLETFRCLSSIRGKEEKESEEQYPYLKLLLQF
DPQQFLNVVSTCADVELFQLDNRLQRFVDTIGQVCVNMKCELSLIHYLALLVQLSERALI
ALPSEPIQDAVITLLKMSPWDQIGTEDAILGGLYHATPDDKRRIIRAAQNPMRPVILSFL
YLSDRKFEELIKCYLDSENKEVYSVIGGILKGGELTVQESAELRSYIMSIMETLYRIDGW
LCANLINDHFREVIVTMAENEEEKRKQVFPVLAGIAQLRKYANQPSFCNDNELDEKLFGI
VFEGICKRWPSWMPTSENPESVDHQLISMFPFWLPLAANTDSCLNIAVGNEYCVRTVVRL
LEARHHLERAFDLLFEQLEKNKENDERMAEWLDETMKFCSRQSTKDDNSDRMMRVFQFIS
KRAAQVGEDSEKQAKIDESLRVMCRQILATGTRYAKQLVDQLLDSPSFSGSSFIDNGGLI
MDILSSCDYEAEIYQEMIYLIREENLTFAQKLELEVSRRAPLMYNSQCITCEQPMNKSGY
VFRYEDYPNVAPFLAVENFVSFPVYSPTFCFSTSAIDNIMFMQKIKTILARLDDLISRNK
LHEHPCLISQAGAQATMRLASKFKLRSDWGAAVEMPFCLHVTENGSCPRTYDYDDLYQQV
QWLMILEEVILPLDNMEDNELSTIAPHQHSTIVKNAIMV
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttctgggtcattagaaaaagaagactggcttgatttaggggacctcaacaac
gctgctaattttactttagatgatgcactgaatgatacagaaagtctaaacgatccatta
ttagatgaacaatttttatttgacggagattttgggtctgtatctaatttggaagattcc
gcacccacttctgataatcagccgctagtctataagcttgatgcatcctttgttatacaa
ccacatcaattaatctctaatcaaattcttaaaaatgagaagaaatcaggacgagtgata
gctgtggctgaaagaaacggatggattgcagttgttactagcaaaggacaactacattta
ttcgatttgaacgggaatctcaaccaatttcatcgaggcgatgagacaatgggcggagct
agttgtgtcacgttttcattagatggaaagtatcttgcgattggactgcaaaaaggagct
atcaagattatgacaattgataacaaactctaccatattatcaatgaaggcggtcaacca
ggccaaggaattgttcaagttctctatacaaaagacaatcatactgtgctcactatcgac
aatggaggaagtttttatgaatgcaaaataaacagacagtggctccagaaaagaaaggat
agtttgagatgccatgtatccggatgcaatggagaaatcgtagcaatgaaattactacca
ggagatgtgattgctcttctgtccgtccacaagctcattttttatgttataaagcctcga
ggaggacaaattctcggtgttttccccacgaagtatgaatttcaattccctccagcttgt
tcttactggttaggatgtccgaaatccgataataataattcaagttcacctctgaattca
ctctatacatcagaactgagagacttcagaatttgcatcagtagagggcacaagatttca
gttctcagattacatgctaataatttcttctcaaaaaagagacgagctacagtaatcaac
caatttgatgtgccttccccactagtgaaccttcactggatgagtactcatgttgttgcc
ggtattgatgcaatgggagctgtttggctaatcgatccagagaagaaaactgcaaagaaa
caggagttggaagatcttcaactcatattttctacaccgattcttaaaggatctgcaaca
ggaggaaaagtcagtgaagcagtgaaagctgttgcagaatacgcatgttatcagtcggtt
acttcggctacttcaacttcagaacgatttatcgtgttggcgcatgatggattgaagtac
cttgaaaaagttcacgaatggcaacaactagagagctataaagaacgtaatgacgacatt
tctgctgcgctctatcttctagacgtatgtagagataaagtgagagcaagtgaagaattc
aaaagagaatcacgtaatctactagccgaaaaaacatctaaactacttactgaaaccgtt
tctggaatcgttggaggacccttgtcagacctacaatctcattaccgaaaatatattcgg
gtaattttgaaagtttgtgtaactggtggacttctcgagtttttgtatactacgtgctgg
gatcgattgagtatggactctatttctaagacggttttcctcgaacatttagatgaatac
gtactggatggtgctctaattgatccaccaactccactcgtcaacgaatatctacaacat
ttagcatccgaagggcacttttcgcaatttcagtcagcagttgtccgttttccaattcat
actcttgatcttcacactgtcatgtctatttgtaagcaaaattccatatacgacggaata
atatatgtaaataacaaagctctcaatgactatataacgcctctcgaggacatgctagct
gaaatgtcggaattcgctcacagaggagtgttttcggacagtgagcagatcctcggtaac
aaagttcttgtctatttgaattgttgtctagctggaatggcctacccatttggtcaactt
gatggcgataatcagaaaagggttccattagaaacatttcgttgcttaagttcaataaga
gggaaagaagagaaagaatcagaagaacagtacccatatttgaagttgctactgcagttt
gatccacaacaatttttgaatgtcgttagtacctgtgcagatgtagaactcttccaattg
gacaacaggctgcaacgttttgtggatacaattgggcaagtttgtgtaaacatgaaatgc
gaactttcacttattcattaccttgctcttttggtgcaactctctgaacgagcgttgata
gctttaccctctgagcctatacaggatgcagtgatcacactactcaaaatgtctccatgg
gatcagattggcacggaagatgccattttgggtggcttgtatcacgcaacacccgacgat
aaaagaagaattatccgggctgctcagaatccaatgcgtccagtcattctgagttttctt
tatttgtcggatcgaaagtttgaagagttgatcaaatgttatttggattcagagaacaaa
gaagtttattctgtaatcggtggaattttgaaaggtggtgaactgactgtccaggaatct
gcggaactcagaagttatattatgagtattatggagaccttgtatcgaatcgatggatgg
ttatgtgctaatctgataaatgatcacttcagagaagtaattgttacaatggctgagaat
gaagaggaaaaaaggaaacaagtatttcctgtactggctggaattgcacaacttagaaag
tatgcaaaccaaccatcgttttgcaatgacaatgagctggatgagaagcttttcgggatt
gtttttgaaggaatctgcaaaaggtggcctagttggatgccaacttcagaaaatccagaa
tctgttgaccatcagctcatttcgatgttcccattttggcttccacttgctgcaaataca
gattcttgtttgaatatagctgttgggaatgaatattgcgtccgtacagttgtcagactt
cttgaagcaagacaccatttggaaagagccttcgatctccttttcgagcaacttgaaaaa
aacaaggaaaatgatgaaagaatggcagaatggcttgacgaaaccatgaaattttgctct
cgacagtcaacaaaagatgacaacagtgatcgcatgatgcgagttttccagttcatttcg
aaacgagctgcacaagttggagaggattctgaaaaacaagcaaaaattgacgaaagcttg
cgagtaatgtgtagacaaattcttgctaccggtaccagatacgcgaagcaactcgtcgat
caattattggatagtccttcgttttctgggtctagtttcatagataatggtggcctgata
atggatatactatcttcgtgtgactatgaagctgaaatatatcaagaaatgatatacttg
attagagaagaaaaccttacgttcgctcagaaactcgagctagaagtgagcagaagagcc
cctttgatgtacaactcccagtgtatcacatgtgaacagcctatgaacaaaagtggatat
gttttccggtacgaagactacccgaatgttgcaccatttctagctgtggaaaactttgta
tcttttccggtttattcacctacattttgtttttctacatctgcgattgataatattatg
ttcatgcagaagatcaagacaatactggctcgtctggatgatctgatttcgcggaacaaa
ctgcatgaacatccttgtctgatttctcaagcaggtgcacaggccacaatgcgtcttgca
tcaaaattcaaacttcgtagtgattggggtgcagctgtcgaaatgcctttttgcttacat
gtcacggagaatggatcatgtcctcgaacgtatgattatgatgacttgtatcaacaggtt
caatggctgatgattctcgaagaagtcatcttaccactagataacatggaagataatgaa
ctttctacgattgctcctcatcaacacagtacaattgttaaaaacgcgattatggtttga
DBGET
integrated database retrieval system