Caenorhabditis remanei (nematode): GCK72_014425
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Entry
GCK72_014425 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCK72_014425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crq03019
]
GCK72_014425
03041 Spliceosome [BR:
crq03041
]
GCK72_014425
03009 Ribosome biogenesis [BR:
crq03009
]
GCK72_014425
03016 Transfer RNA biogenesis [BR:
crq03016
]
GCK72_014425
Enzymes [BR:
crq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCK72_014425
Messenger RNA biogenesis [BR:
crq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GCK72_014425
Spliceosome [BR:
crq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GCK72_014425
Complex C
U4/U6.U5 tri-SnRNP related factors
GCK72_014425
Ribosome biogenesis [BR:
crq03009
]
Eukaryotic type
Pre-60S particles
Helicases
GCK72_014425
Transfer RNA biogenesis [BR:
crq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GCK72_014425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9798147
NCBI-ProteinID:
XP_053585052
UniProt:
A0A6A5GS02
LinkDB
All DBs
Position
IV:complement(15886126..15890012)
Genome browser
AA seq
1023 aa
AA seq
DB search
MDFFDEVADEQKVPISLEDEETAEDPMKKLEADKKRKAREETESLLARMATDDGGGMFEE
TVAKRARIEEEEENTDDRMENIVVHTIQTNNENCTHEVAIPPNSKFRQLEPKNGEPAKYY
PFQLDAFQKQAILCIDNNESVLVSAHTSAGKTVVATYAIAQCLREKQRVIYTSPIKALSN
QKYRELEEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEIIKEVGWVVYDEIHY
MRDKERGVVWEETIILMSSNVKQAFLSATIPNAREFAQWVCSIKQQPVNVVYTDYRPTPL
QHFIYPVGGEGMYEVVNVKGEFREDKFNDAMSGLATAGDSAGSFQKRRTNGTQGDSNVLK
IIRSVATNDGLNCIVFSFSRKECESYAISLKDMDFNQAHEKGMVKSVYESAISQLSPEDQ
NLPQILNILPLLKRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTV
VFTSARKFDGTDNRYISSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSSDDAKQIIKGAT
DPLNSQFRLTYNMVLNLMRVEGMAVSWIINNSFHQFQSYSKIPEIDKKCVQAEKKVASFK
FSWETDMCTYLDVQNQLEKTRQDILKIQREPKHLVGFLHSGRLLKVKSGDRDFKWGILNQ
FRKEINPNDKNDTIYVCDMIVAVKDDQKLDPTNPATLTPGFDLSRRKWIRVPMSTDRITA
ISAIRLKIPAHIESQDAQFRLDTVMTAAMKRLGGDVPLLDPITDMDIRNPEIHVLVDREK
TLKSRLENHRMSNRADLEDCKKQYEVKLDAIKEFEALKAERKGLKSTLHLEELDNRKRVL
RRLGYLRNDDSLELKGRVACELSASDELILTEMLLKGLFNSLDVAQTAALLSCFVFQDNC
SAPKLSSELQTCLSELHEQARHVAKVSNECKMEIVEDKYVSSFNPGLMDVVSQWVNGASF
NEIVKTTDVFEGSIIRCLRRLEEVLREMINAAKACANSELEQKFEEARKNLKRDIVFAAS
LYL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggattttttcgatgaggtagccgatgagcaaaaagtgccgatttctttagaggatgaa
gaaacagcagaggacccaatgaagaagcttgaggcggataaaaaacgaaaagcacgcgag
gaaacagaaagtttgttggcgagaatggctaccgatgatggtggtggaatgtttgaggag
acagtagcaaaacgtgctcgaatcgaagaagaagaagagaatactgacgacagaatggag
aatattgttgttcacacaattcagacgaataacgaaaattgcactcatgaagtcgccatt
ccacccaatagtaaattccgtcagttggaaccgaaaaatggtgaacccgccaagtactac
ccgttccagttagacgccttccagaaacaagctattctttgcatcgacaacaacgaatcc
gttctcgtctcagctcatacttctgctggtaaaaccgttgttgccacatacgcaatcgca
caatgtcttcgcgagaaacaacgcgttatttacacatcaccaatcaaagcgctctcgaat
caaaaatatcgagaacttgaagaagagttcaaagatgtcggtctaatgactggagatgtt
acaatcaatccagacgcttcttgtctcgtcatgacaactgaaattctcagatccatgctt
tacagaggatctgagattattaaagaagtcggatgggttgtgtatgatgagattcattat
atgcgtgataaagaacgtggagtggtttgggaggaaactatcatcctaatgagcagcaat
gtgaaacaagctttcctgtcagctactatcccgaatgccagagagttcgctcaatgggta
tgcagtataaaacagcaacctgtaaacgtcgtttatacggattaccgtccaactccacta
caacactttatttatccagtaggcggagaaggaatgtacgaggtggtgaacgtcaagggc
gaattccgtgaagacaaattcaatgatgcaatgtctggattggcgactgctggagattca
gctggaagtttccaaaaaagaagaaccaacggtactcaaggagactcaaacgttctgaaa
atcattcgatcagtcgcaaccaatgatggactcaactgtatcgttttctcgttttcacgg
aaagaatgcgagtcatacgctataagtttaaaagatatggatttcaatcaagcgcatgaa
aagggaatggttaaatcagtttacgaaagtgcaatttctcaattgtcaccagaagatcag
aacttacctcaaatattgaatattcttccacttctcaaacgcggaatcggtgttcatcat
tctggacttatgccaattctcaaagaaactattgaaattttgttcggagaaggacttgtc
aaagttctttttgctactgaaactttttccatgggattgaacatgccagcaagaacggtc
gtattcacatctgcaagaaaattcgacggtactgataatcgatatatttcctctggagag
tatattcaaatggcgggaagagctggaagaagaggaaaagatgacagaggaactgttatt
ctgatggttgattcagctatgtcgtcagatgatgcaaagcaaatcatcaagggtgcaact
gatcctttgaattcccaatttcgtctcacatacaacatggttctcaatttgatgagagtc
gaaggaatggctgtatcgtggatcattaataacagtttccatcaattccagagttattca
aaaatcccagaaattgataaaaaatgtgttcaagcggaaaaaaaggttgcctcgttcaaa
ttcagttgggaaactgatatgtgtacctaccttgacgttcagaaccaattggagaaaact
cgtcaggatattttaaaaattcaacgagaaccaaaacatctcgtgggatttcttcattct
ggacgacttctaaaggtgaaatctggggatcgggatttcaaatggggaattctaaaccaa
ttccgaaaagaaataaatccaaacgataaaaatgataccatctatgtatgtgatatgatc
gttgctgtaaaagatgatcagaaacttgatcccacaaatcctgccacccttacacctggt
tttgacttgtctagacgtaagtggatccgtgtgccgatgtcgaccgaccgtattacggct
atttctgcaattcgtcttaaaattccggctcatatcgaatctcaagacgcacaattccgt
cttgatactgtcatgactgctgcgatgaagagattgggtggagacgtaccacttcttgat
cccatcacggatatggatatcagaaacccggaaatccacgttcttgttgatcgtgagaaa
actctaaaaagtcgtcttgaaaatcacagaatgagcaaccgtgctgacttggaagattgc
aaaaaacagtacgaagtgaaattggatgccatcaaagaatttgaagcattgaaagcggaa
cgaaagggactcaagagtacattgcatttagaagagttagataacagaaaacgagtgtta
cggcggttgggatatctcagaaatgatgattctcttgagttgaagggccgagtagcttgc
gaactttccgcttccgacgaattaattctaactgaaatgcttctaaaaggactcttcaac
agtcttgatgtagcccaaactgccgcgctcttgtcctgttttgttttccaagataactgt
tcggctcccaaattgtcgagtgaacttcaaacttgcctcagcgagcttcatgaacaagct
cgtcatgtcgcaaaagtgtctaatgagtgcaaaatggaaattgtcgaggataagtatgtc
agcagtttcaatccaggtctcatggacgttgtttctcaatgggttaacggagcctcgttc
aacgaaatcgtcaaaacaacagatgtattcgaaggatctatcatccgatgtcttcgccgt
cttgaagaagtattacgtgaaatgatcaatgccgccaaagcttgtgccaactcggaattg
gagcagaagtttgaagaggctcgcaaaaatttgaagagagatatcgttttcgccgcatct
ctctatctttaa
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