Caenorhabditis remanei (nematode): GCK72_014637
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Entry
GCK72_014637 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03022
Basal transcription factors
crq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GCK72_014637
09124 Replication and repair
03420 Nucleotide excision repair
GCK72_014637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crq03021
]
GCK72_014637
03400 DNA repair and recombination proteins [BR:
crq03400
]
GCK72_014637
Transcription machinery [BR:
crq03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GCK72_014637
DNA repair and recombination proteins [BR:
crq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GCK72_014637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF4855
Motif
Other DBs
NCBI-GeneID:
9828985
NCBI-ProteinID:
XP_003108267
UniProt:
A0A6A5GUI0
E3M705
LinkDB
All DBs
Position
IV:complement(16616544..16619036)
Genome browser
AA seq
531 aa
AA seq
DB search
MTDETEALIRVDHVKYRKAGDGRSPIGRLALFSDYVEWRDNASPEVFTCKFIHIKGQRVS
PPHKSKVQLQLNLANDEQATFVFLNPGSSKEDLLKERDVFKVKLQNALTQHRKRVNELAK
SVESKSMNTELEAKQKILCEDRNLEKLYKNLVYTKTITPQDFWSDYYQQEGVSEDKIGIN
GAFLANIVQQEGTNGVRLNLNQEIIQAIYTTYPTVQKKNLELVPHEMSEETFWKKFFQSH
YFHREREVLPNPKDPFAECVRDDDEEMTKMSAEKVQRKRFDLDHIDDNGLRDFVHKSESL
PKSTRNTLIKRCNYLSEKILASSWKSGEASTSAGKEKKGFGVLDRLVVETEGRLESDDLA
EKESQEEVQLVRINSSAKATQSVYSKREMQQYKGIVADYFSNWSVEGILHRNEMLLDQQG
MEIFETEEALRDEQDGAPPPEIWCQTASELTKMRDIHSSVRELCRHFWKCFPPVSTETEE
KLIRMATTLSKFKDEQLSRNKEIDPTNLEHCVQMIDLALQKFESYEMKKPN
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgaaactgaagcattgataagagttgaccacgtaaagtacagaaaagctgga
gacggaaggtcaccaattggccgtttggctctgttcagtgattacgtcgaatggagagat
aacgcaagtccagaagttttcacttgtaaatttattcacattaaaggtcaaagagtatct
ccacctcacaaatcgaaagttcagctgcagttgaatctagcaaatgacgaacaagctact
tttgtatttctcaatcctggatcttcaaaggaggatttactgaaagaacgagatgttttt
aaagtgaaactacagaatgctctcactcagcatcgtaaacgtgttaatgagctggctaaa
tcagtggaaagtaaatctatgaacacggaactcgaagcgaagcagaaaattttatgcgaa
gatcgtaatctggaaaagctttataaaaatttggtatacacgaaaacgataactccgcaa
gacttctggtcagattactatcagcaagaaggtgtttcggaagacaaaattggaattaat
ggggcctttcttgcaaatattgttcaacaggaaggaacaaatggcgtcaggttgaatttg
aatcaagaaatcattcaagcgatttatacaacatatccaacagtgcaaaagaaaaacctc
gaattggttccacatgaaatgtcagaagaaacgttctggaagaaattctttcaatctcat
tatttccatcgggaaagagaagttcttccgaatccaaaagatccattcgcagaatgtgtt
cgtgacgatgatgaagaaatgacgaagatgtctgctgagaaagttcaaagaaaacgattc
gatttggatcatattgacgacaatggtttgagagatttcgttcataaatctgaatcgttg
ccaaagtcaacaaggaatactctcatcaagagatgcaactatttatctgaaaagattctt
gcgagttcatggaaatccggagaagcaagcacctctgctggaaaagaaaagaaaggattt
ggtgttctggacagacttgtggttgaaacagagggtcgactggaatctgatgatcttgct
gagaaagaaagtcaagaagaagttcaacttgttcgtatcaattcatcggctaaagcaaca
caatcagtttattccaaaagagaaatgcaacaatacaaaggcatcgtggctgactatttc
agcaattggtctgtggagggtatccttcatcgtaacgagatgttgttggatcaacaaggg
atggaaattttcgaaactgaagaagctttgagagatgaacaagatggtgcacctccaccg
gaaatatggtgtcagactgcttcagaactcacaaaaatgcgagatattcacagttcggta
cgagagctctgcagacatttctggaaatgttttcctcctgtgagcaccgaaacagaagag
aaattaattcgcatggcaacaactttgagtaaattcaaggatgaacaattgagtagaaat
aaggaaatcgatccgacaaatcttgaacattgcgtccaaatgattgatctcgctcttcag
aagtttgaatcgtatgaaatgaagaaacctaattaa
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