KEGG   Caenorhabditis remanei (nematode): GCK72_015516
Entry
GCK72_015516      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K14004  protein transport protein SEC13
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03013  Nucleocytoplasmic transport
crq04141  Protein processing in endoplasmic reticulum
crq04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    GCK72_015516
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    GCK72_015516
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    GCK72_015516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_015516
   04131 Membrane trafficking [BR:crq04131]
    GCK72_015516
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     GCK72_015516
Membrane trafficking [BR:crq04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    GCK72_015516
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    GCK72_015516
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    GCK72_015516
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EML WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 9811680
NCBI-ProteinID: XP_053585704
LinkDB
Position
IV
AA seq 315 aa
MTTIRQRIDTQHRDAIHDAQLNIYGNRLATCGSDRLVKIFEVRPNGQSYPLIELSGHNGP
VWKVSWAHPKYGGLLASAAYDKKVIIWQEINGRWQKSYEWACHEASTTSVAFAPHQYGLW
LASSSADGDIGILRYDSVTGQWQSSKIQKCHEQGVNSVSWAPGSADPTAKKRLVSAGNDK
CAKIWVLNESTNEWILEKTLNGHTDFVREAAWCPVTNKGQHSIVSCGLEGNLVLYRNSNI
ETDEWKSKLLEKSPCPLYHASFSPCGSFLSVSGDDNMITIWRENLQGQWIKVPRENKERE
GMTASQGGQSNGSQR
NT seq 948 nt   +upstreamnt  +downstreamnt
atgaccacaattcgccagagaatcgatacccaacatcgtgatgccattcacgacgctcaa
ctcaacatctacggaaatcgacttgccacgtgtggatccgatcgtcttgtcaagattttt
gaggtccgcccaaacggtcaatcgtatccactaatcgaactatccggacacaatggacca
gtatggaaagtatcatgggctcatccaaaatacggtggacttcttgcatcggctgcttat
gataaaaaagtgataatctggcaagaaatcaatggccgctggcagaaatcgtacgaatgg
gcgtgtcatgaggcgtcgacgacttccgtcgcattcgcccctcatcaatacggtctctgg
ttggcttcatcgtcagccgacggtgatatcggaattcttcgttacgattcagtcaccgga
caatggcaatcgtcgaaaatccagaaatgtcacgaacagggagtgaattctgtctcatgg
gcacccggaagtgctgatccgacggcgaagaagcgtctcgtgtcggctggaaacgataaa
tgtgcaaagatttgggttttaaacgagtcgacaaacgaatggattctggagaaaactctc
aacggacacacagatttcgtccgtgaggcggcatggtgtccagtgacaaacaaaggacaa
cattcgatcgtttcgtgtggtttggagggaaatctcgttttgtaccgtaattcgaatatc
gaaaccgacgaatggaagtcgaaattgttggagaaatcgccgtgtccactgtatcacgct
tcgttctcaccgtgtggatcgtttttgtccgtttctggtgatgataatatgatcacaatt
tggcgtgaaaacttgcaaggacaatggataaaagtgccacgagagaataaagaaagagag
ggaatgacggcgtcgcaaggaggacaatccaacggatcacagagatag

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