Caenorhabditis remanei (nematode): GCK72_015839 Help Entry GCK72_015839      CDS       T09085                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism crq  Caenorhabditis remanei (nematode) Pathway crq03020   RNA polymerase crq03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:crq00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     GCK72_015839   09124 Replication and repair    03420 Nucleotide excision repair     GCK72_015839  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:crq03021]     GCK72_015839    03400 DNA repair and recombination proteins [BR:crq03400]     GCK72_015839 Enzymes [BR:crq01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      GCK72_015839 Transcription machinery [BR:crq03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      GCK72_015839 DNA repair and recombination proteins [BR:crq03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       GCK72_015839 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R EutB Motif Other DBs NCBI-GeneID:  9808519 NCBI-ProteinID:  XP_003096353 UniProt:  A0A6A5GYJ0 E3N5G7 LinkDB All DBs Position IV:complement(22785284..22798400) Genome browser AA seq 1853 aa AA seqDB search MALVGVDFQAPLRTVCRVQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVI DRRGRCMTCAGNLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPR VMDILKKTSGNAKKRLALIYDLCKSKSVCEGAAEKEEGLPDDVDDPMSGEKKIPAGCGRY QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQITDEDILVVGMDPQFARPE WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD VRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGAR VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL SVTSPYNADFDGDEMNLHLPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQDTLCAVR MMTKRDVFIDWSFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQLFSLIIPGNVNVLRTH STHPDNEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA NFYSHIQTVINAWLLRVGHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKAHNDDLE PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIA CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPTEFFFHAMGGREG LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVEDQNM PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGN DEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESRFQQAIAQPGEM VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLKTPSLTVFLTGA AAKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK GADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGG FKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVIS FDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEASVHAE VDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGAGYYGGFAGSPNAH EFSPSHSPWNSGVTPSYGGASWSPGAGGMSPSAGFSPAGNMDGGASPFNEGGWSPASPGD PLGALSPRTPAYGGMSPGAYSPTSPQFSMTSPHYSPTSPSYSPTSPAAGQSPASPSYSPT SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY SPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYS PTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRAFSPQYSPTSPTYSPTSPSYTPSSPQY SPTSPTYTPSPSDQPGTSAQYSPSSPTYSPSSPTYSPASPSYSPSSPTYDPNP NT seq 5562 nt NT seq  +upstreamnt  +downstreamnt atggcattagtcggcgtggactttcaggcgccgttacggacggtttgccgcgtccaattc gggattttgggtcccgaggagattaagagaatgtccgtcgctcatgtcgagttcccagag atctacgaaaacggaaagccgaagcttggcggtctgatggatccgagacaaggagtgatt gatagacgcggaagatgcatgacatgcgccggcaatctaaccgactgtcccggtcatttc gcccatttggagttggcaaaacccgtgtttcacatcggattcctcacaaaatcgctcaaa atcctgcgctgcgtctgcttctactgcggacgtcttctgatcgacaagtcgaatccacga gtcatggatattctgaagaagacgtcgggaaacgcgaagaagcgtctggcgttgatttac gatttgtgtaaatcaaagtcagtgtgcgaaggagcggcggagaaggaggagggacttcca gatgacgtcgacgatccgatgagcggagagaagaagattccagcgggatgtggaagatac cagccatcgtaccgtcgtgttggaatcgatatcaacgcggaatggaagaaaaacgtcaat gaggacacccaggagcgtaaaatcatgctcaccgccgaacgagtgctggaagttttcaaa cagatcactgatgaggatattctagtcgtcggaatggatccacaattcgcgcgacccgaa tggatgatttgtaccgtactaccggtcccgccgcttgcagtccgaccggcggtcgtcacg tttggatcggcgaagaatcaggatgatttgacgcataaactgtcggacatcataaagacc aatcagcaacttcaaagaaacgaagcaaacggagcagcggctcacgtgctcacagatgac gtccgtcttctacagtaccacgtggcgacactcgtcgacaattgtatccccggccttccg acggcgactcagaaaggcggacgccctctaaaatcaatcaaacaacgtctgaaaggaaaa gagggtcgaattcgtggaaatttgatgggaaaacgtgtggatttctcggcgcgtactgta attacagccgatccgaatctcccaatcgatacagtcggtgtgccgcgaactatcgctcaa aatctgacattccctgaaatcgtgacgccattcaacgtggataaactgcaagagctcgta aatcgaggcgatacacagtacccgggtgccaaatatatcatcagagagaacggcgctcgc gtcgatttgagatatcacccgagggcggcggatctccatttacagccgggttatcgtgtg gagagacatatgaaagatggagatatcattgtgtttaatcgacaaccgacactccataaa atgtcaatgatgggacatcgtgtcaagattcttccatggtctacgttccgtatgaatttg tctgtcacatcaccgtataatgcggatttcgatggagatgagatgaatttgcacttgccg caaagtttggagactcgcgctgagattgaggagatttgtatggtgccaagacaactaatc acaccacaagccaacaaaccagtgatgggtatcgtccaggacactctctgcgccgtccgt atgatgacaaaacgagatgtcttcatcgattggtcatttatgatggatttgctgatgtat ctcccaacttgggacggaaaagtgccccagccggcgattctgaagccaaaacctctttgg acaggaaaacaattgttctcactgatcattcctggcaatgtgaacgtcctcagaacccac agtacccatccggataacgaggattctggaccctacaaatggatctctccgggagacaca aaagtgctcattgagcacggagagctcttatccggaatcgtttgctccaagactgtcgga aaatccgctggaaatttgctccatgtcgtcacgctggagttgggatacgaaatcgccgcg aatttctattcgcatattcaaacggtcatcaacgcgtggcttctccgcgtaggacacacc atcggaatcggagacacaattgccgatcatgcgacatatctggatattcagaatacgatt aaaaaagcgaaacaagacgtcgtcgacatcatcgagaaggcgcacaacgatgatttggag ccgacgcccggaaacacgttgagacagactttcgagaataaagtgaatcagattttgaat gacgctcgtgatcgaactggtagttcggcgcagaaatcgctgtccgaattcaataatttc aagtcgatggtcgtttccggatcgaagggatcgaaaattaatatctcgcaggttatcgct tgtgtcggacaacaaaacgtcgaaggaaagcgtattccattcggattccgtcaccgtact cttccccatttcatcaaagacgactacggaccagaatcgaaaggattcgtcgagaattcg tatctcgccggtctaacgcctactgaattcttcttccacgcaatgggaggacgtgaaggt ctgattgatacggctgtgaaaacggctgaaactggatacattcaacgtcgtctcatcaag gcgatggagagtgttatggtcaattatgatggtactgtaaggaattcgttggcacaaatg gtacagctgagatacggagaggacggattggacggaatgtgggttgaggatcagaatatg ccgacgatgaagccgaataacgccgtgtttgagagagatttcagaatggatctcaccgac aacaaattccttcgaaagaactactcagaagacgtcgttcgtgagattcaagaatccgag gacggcatctcgctcgtcgaatccgaatggtctcaactcgaagaggatcgacgtctcctt cgtaaaatcttcccccgtggtgacgcgaagatcgtacttccttgcaatctccaacgtctc atctggaacgcccaaaaaatcttcaaagtggatctccgaaagccggtgaatctctctcca cttcatgtgatcaacggcgtccgtgagctatcgaaaaagctgataatcgtcagtggcaac gatgagatctcgaaacaagctcagtataatgcgacgttgctcatgaatattctgttgcgc tccacactttgcacgaagaagatgtgcacgtcggcgaaactgaatacggaggcgttcgat tggttattgggagaagtggagtcacgattccaacaggcgattgctcaaccgggagaaatg gttggagcattggctgctcagtcactcggagagcccgccactcagatgacattgaatacg ttccattatgcaggagtttcagcgaaaaatgtgactcttggagtgccacgtctcaaggaa atcatcaatgtctccaagcaactgaaaaccccatcgcttaccgtattcctcaccggtgcc gctgcaaaagacgctgaaaaagcgaaggatgtgctctgtaagctggagcatacgacgctg aaaaaggtgacattgaacactgcgatctactacgatcctgacccgaagaataccgtaatc gcggaagacgaggagtgggtatcgattttctatgagatgccggatcacgacttgtcgaga acgtctccgtggttgttgagaatcgaattggatcggaagagaatggtggataagaagttg acgatggaaatgatagcggatcgaattcatggaggatttggtaacgatgtgcacacgatt tataccgatgacaacgctgaaaaactggttttccgcttgagaatcgccggagaggataag ggagcggacacacaggaggagcaggtggataagatggaggatgacgtcttcttgagatgt atcgaggcgaatatgttgtcggatttgacgcttcaaggaattccagccatctctaaagtc tatatgaatcagccgaatactgatgataagaaacggattattatcacgccggagggtgga ttcaaggcggtcgccgactggattctggagactgatggaaccgcgttgctgcgagttcta tcggaaagacaaatcgatccggttcgaacgacttcgaatgatatctgcgagatctttgag gtgttgggaatcgaggcggtgcgaaaggcgattgagcgggaaatggacaatgtcatctcg ttcgacggttcctatgtgaattacagacatttggcgttgctttgtgatgtgatgactgcg aagggacacttgatggccattacgagacatggaattaatcgacaggaggttggagcactc atgagatgctcgttcgaggagacggtcgatattttgatggaggcctcggttcatgcggag gtggaccctgttaaaggagtctccgagaacattatgctcggccaactggctcgttgcggt acgggatgtttcgatttggtgttggatgtggagaaatgcaaatatggaatggaaattcca cagaatgtcgtcatgggtgccggttattacggtggattcgctggatcgccgaacgcacac gaattctcgccatcgcactctccatggaattcaggagtcactccatcatacggcggtgca tcatggtcgccaggagccggtggaatgtcaccaagtgccggattctctccagccggaaat atggacggtggcgcgtcaccattcaacgaaggcggttggtcgccagcgtctccaggagat ccactcggagctctgtcccccagaacacccgcttacggtggaatgtctcctggagcctac tcgccaacgtctccacaattctcgatgacgtcaccacactattcgccaacatctccgagt tattcgccaacttctccagctgccggacaatcgccggcgtctcccagttattcgccaact tctccgagttattcgccaacatcgccgagttatagtccgacgtctcccagctactcgccg acgtctccaagctattcaccgacatctccgagttattcgccaacttcgccgagctactcg ccgacatcgccaagttatagtccgacgtcgccgagctattcgccgtcgagcccgagatat tcgccaacgtcgcccacttatagtccgactagtccgacatactctccaacatcaccaaca tactctccgacgtctccaacgtattctccaacgtcgccaagttacgagggatactcgccg tcgtcgccaaagtactcgccgtcgtcgcccacctactcgccgacgtctccatcgtattca ccaacgtcgccacagtattcgccgacgtcgccacagtacagtccgagctcaccgacatac actccatcgtcaccaacatacaatccgacgtcaccacgtgcgttctcaccacaatactcg ccaacgtcgccaacgtattcgccgacgtcgccgagctacacaccgtcgtcgccacaatac tcgccgacgtcgccaacctacacgccatcgccatccgatcaaccaggcacttcggctcag tactccccatcatcgccaacgtattcgccgtcgtctccaacatattcaccggcgtcacca tcctacagtccaagttcgccgacatacgatccaaatccataa

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