KEGG   Caenorhabditis remanei (nematode): GCK72_018094
Entry
GCK72_018094      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K14315  nucleoporin NDC1
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    GCK72_018094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_018094
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     GCK72_018094
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 9812415
NCBI-ProteinID: XP_003114391
UniProt: E3LPQ2 A0A6A5G963
LinkDB
Position
V:complement(<8090706..>8092889)
AA seq 590 aa
MMGDTASSFTSLADNQLYNKFSPSRRKVEYPAANISSSSPSLRKSPGRAFSTSYPHLNRP
ITIFDQIVTWFHSEIDKRKRFASVVCGYFVALTFIATVSILKLSIWSPFSSVHDSLTWWI
YPSSWPSIVFIWVSSVALAYALILQFCKVTQLQRIPLTDTFAWAGVAHEFIHRLVFVYMA
FSVAESSLFEDFAWIAISFAVAVSSTLVIFRSDFHLNFSNVQVNSVKTLLQFVKSLPYGS
VSETCGVDAAIAYTASMALVLIAGPLLWGFSVWWLLVDIPFQMVLFGVCFTQQFYSKFFM
KIVNQIVMKPMKFSFPPPYTVHTPTQDQIRSLPNVIETDDQLLRMFAFHDLRTVAWEDEQ
RRVDVFSLSQPGKHPRNWKAVSLPCIRTLDELCSRMTVAAARLVGYSWDDHDAESEEVPR
EAVMMPRKMREMAYHGAGPSRQQQNIAPIRTHNTQTAGFFDRIIRNLGFGKTERLVISRF
DAQMNAYAAEAVYMLVVDSMGEDRFGVVQKDLKELITLLCKLISAIDTYERAKASVADKS
DVTFLRIVDASLKSSLQRVVTTFGSHLRSLELADEHIRTIRLVCLNEEFE
NT seq 1773 nt   +upstreamnt  +downstreamnt
atgatgggggatactgcatcttcatttacatcactggcagacaatcaactgtataacaaa
ttttcccctagtagaagaaaagttgagtatcctgctgcgaacatttcatcttcctcgcca
agcttgcggaaatcaccgggccgggcattcagcacatcttatccccatcttaaccgaccg
atcacaatattcgatcagattgtgacttggtttcactctgaaatcgataagcgaaagcga
tttgctagcgtcgtgtgtggatatttcgtagccctaacatttatcgccacagtttctatc
ttgaagctgtcgatatggtcaccgttcagttcggtgcacgattccctaacatggtggatc
tatcctagctcgtggccttcgatcgttttcatttgggtatcctcagtcgcattagcttat
gctctcattcttcagttctgcaaagttactcaactacaacgaattcctctcacggataca
ttcgcatgggctggagtcgctcacgaatttattcatcgtttggttttcgtatacatggct
ttctccgtagctgagtcgtcgttgtttgaagattttgcgtggattgccatttcattcgcc
gtcgccgtgtcatctactcttgttattttcagatctgattttcatttgaatttttctaat
gttcaagtgaactctgtcaaaactcttctccaattcgtgaaatctcttccgtacggatcg
gtctccgagacatgtggagtcgatgcagccatcgcctacactgcttccatggctcttgtg
ttgattgctggtcctcttctgtggggattctctgtttggtggcttctcgttgatatcccc
tttcagatggttttattcggagtttgtttcactcaacaattttactcgaagtttttcatg
aagatagttaaccaaatagtcatgaagccgatgaaattctcattccctccaccatacacc
gtccacactccaactcaggatcaaattagatcccttccaaatgttattgaaactgacgat
caacttctgagaatgttcgcttttcatgatctccgtacagtagcatgggaagacgaacaa
cgtcgggtcgatgtgttttctctctcacaacctggaaaacatccacgtaattggaaggct
gtttctttgccatgcatccgcacacttgatgaactttgttcgagaatgacagtagctgct
gcacgtcttgttggatactcgtgggatgatcatgatgctgagagcgaggaagtgccacga
gaagctgtaatgatgcctagaaaaatgcgtgagatggcataccatggagccggaccaagc
cgacagcagcagaacattgcaccaattcgtactcacaacactcagacagcaggatttttc
gacagaatcatccgtaatcttggattcggaaaaacagagagacttgttatttctcgtttc
gatgctcaaatgaatgcatatgctgctgaagctgtttacatgctggtggttgattcaatg
ggagaagatcgatttggagtggttcagaaagatttgaaggaacttatcactcttttatgc
aagcttatttctgccatcgacacatacgaaagagcgaaagcttcggtcgctgacaaatca
gatgtgacatttttgcgtatcgttgatgcatcgctcaagtctagtcttcaacgcgtcgtc
actacattcggaagtcatttgagatcgcttgaactggctgacgaacacattcgtacaatt
cgacttgtctgccttaatgaagaattcgaatga

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