KEGG   Caenorhabditis remanei (nematode): GCK72_018171
Entry
GCK72_018171      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03030  DNA replication
crq03410  Base excision repair
crq03420  Nucleotide excision repair
crq03430  Mismatch repair
crq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GCK72_018171
   03410 Base excision repair
    GCK72_018171
   03420 Nucleotide excision repair
    GCK72_018171
   03430 Mismatch repair
    GCK72_018171
   03440 Homologous recombination
    GCK72_018171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:crq03032]
    GCK72_018171
   03400 DNA repair and recombination proteins [BR:crq03400]
    GCK72_018171
Enzymes [BR:crq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GCK72_018171
DNA replication proteins [BR:crq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    GCK72_018171
DNA repair and recombination proteins [BR:crq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      GCK72_018171
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     GCK72_018171
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2 divDNApol baeRF_family3 ABC_sub_bind
Other DBs
NCBI-GeneID: 9818947
NCBI-ProteinID: XP_053581344
LinkDB
Position
V:8401471..8405124
AA seq 1081 aa
MSTKRPGGASFQPEVKRKRESDEFEQCYVPKFEKELPATPKIDKTGWARPAVDKDLGITK
SIACQVLEVETYHEDGSATTYDRTNVKLYGVTKAGNSICVIVTDYFPHFYFQAPQGFGVE
HIQTAQTAICNMVASAKRRGGSGQNQLPGKVVDNLVHIELVRGENLYYFRGADTKVPFVK
VTGSTEALHKARMELRNGINLMGKGPVNVGNLYESNINDIVKFMAKTNIVGCGWIELPAG
KCQILSNSEKSSRCQIEVSVNVKNLIVHESEGEWADIAPIRTLSLDIECIGRRGVFPEAI
KDPIIQIANLVKIEGETEPFVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVREVDP
DIITGYNILNFDLPYILDRAKVLSLPQVSHLGRQKDKGSVVRDAAISSKQMGSRVNKSID
IHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRGDEQTRRRLAQ
YCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFL
PVIEVNSGDGEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGV
ENEDYIRTPSGQYFATKSKRHGLLPEILEDLLAARKRAKNFMKNEKDEFKRMVYNGRQLA
LKISANSVYGFTGAVVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALEGKCPADA
KVIYGDTDSVMVKFGVENVAQAMEIGLEAAKEVSKIFTPPIKLEFEKVYFPYLLINKKRY
AGLYFTKPEVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTISD
LLCNKIDISLLIISKELTKSGDKYQAKQAHVELAARMKKRDAGSAPRLGDRVPYVFVAAA
KNVPAYERAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRV
RTVVQSKVGGLAAFTKKSATCLGCKSVLPKMESENAVCKHCEPKLPEIYASRLVTMHELE
NHFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSETNTIMQRFGDPCFAPPT
K
NT seq 3246 nt   +upstreamnt  +downstreamnt
atgtccaccaaacgtcccggtggtgcgtcgtttcaaccagaagtcaaacgtaaacgtgag
agtgatgaattcgaacagtgctacgtgccaaaattcgaaaaagaacttcctgccactccc
aaaatcgataaaaccggatgggcgaggccagctgttgataaggatttaggaatcactaaa
agtattgcatgccaagtactcgaagtcgagacttatcacgaggatgggtccgcgactact
tatgacagaactaacgtaaaattgtacggagtgacaaaagcaggaaactcgatctgcgtt
attgtgactgattacttccctcacttttattttcaggcaccacaaggcttcggagtagaa
cacatacaaactgctcaaactgccatttgtaacatggttgcatccgcgaaacgtcgagga
ggaagtggacagaaccaactacctggaaaagtcgttgataatctagttcacattgaattg
gttcggggagagaatctttactattttcgtggcgctgatactaaagttccgtttgttaaa
gtaactggatccacagaagcacttcataaagctcgtatggaactcagaaatggaatcaat
ttgatgggaaaaggacctgtaaatgttggaaatttatatgagtcgaacatcaacgatatc
gttaagttcatggcgaaaacgaatattgtcggatgtggttggattgaacttcctgctgga
aagtgccagattctctcgaacagcgaaaaatcctccaggtgtcaaatagaagtttcggtt
aacgtcaaaaacttgattgttcatgaaagcgaaggagaatgggcagacattgctccgatt
cgtactctctccctggatatcgaatgtattggtcggcggggagtctttcctgaagctatc
aaagatccaattattcaaatcgcgaatcttgttaaaatcgaaggagaaaccgaaccattc
gttcgaaactgttttgtacttggaacatgtgctcctgttgtcggatcgaatattatccag
tgcgtcaatgaaaaagttcttcttgaaaaatgggcggaattcgtacgtgaagttgatcct
gatattatcactggttataatatcctcaacttcgatcttccatacattttggatcgtgca
aaggttctctcgctccctcaagtttcacatttgggtcgacaaaaagataagggatcagtt
gtcagagatgctgctatttcgtcgaaacaaatgggaagtcgagtgaataaaagtattgat
attcacggaagaatcattttcgacgttcttcaagttgttcttcgtgattataaacttcgt
agttacacactaaacagtgtctcctaccagtttctttctgaacaaaaagaagatgtcgaa
cacaatatcattcccgatcttcaacgtggagatgagcaaacaagaagacgtttggctcaa
tattgtttgaaagatgcatatctcccacttcgtttacttgataaactcatgtcaatcatt
aattacattgaaatggcaagagttactggtgttcctatgaatttccttctcacgaaagga
cagcagattaagatcttatcaatgatgctccgacgatgcaagcagaacaatttctttttg
ccagtgattgaagtgaattctggagatggagagggttacgaaggagccactgtcattgat
ccaattcgtggtttctacaatgaaccgattgcaactctcgatttcgcatcgctgtatccg
tccatcatgattgctcataatctctgttacacaactcttctgaaatcaccgcaaggagtt
gaaaatgaagattatattcgaacgccatccggacagtactttgctaccaaatctaagcgt
cacgggctattgcctgaaattctcgaagaccttcttgcagctagaaagcgtgccaaaaat
ttcatgaagaatgagaaagatgaattcaaacggatggtgtacaatggacgacagttggct
ttgaagatttccgccaattcagtctatggcttcactggtgccgttgttggaaagcttccg
tgtctcgaaatttctcaatctgtaactgctttcggaagaaaaatgattgatatgacaaag
tctgaagtagaaagaatttacaagaaaggggctcttgaagggaagtgtcctgcagatgct
aaagtcatttatggagatactgactcggtaatggtgaaattcggagttgaaaatgtggca
caagccatggaaattggacttgaagctgcaaaagaagtcagcaagatcttcactccgcca
attaaactggaattcgagaaagtgtatttcccgtatctactcatcaacaagaaacgttac
gctggtctttacttcactaaacccgaagttcatgacaaaatggactgtaaaggattggaa
actgttcgacgtgataattgtccgctggtcgcgaaagtactcggagtatgtctcgaaaag
cttctgattgaaagagatcaacaatcagcattagatttcgcaaaaagaacaatcagtgat
ttactttgtaacaagattgacatttcactattgattattagcaaagagcttacgaaatca
ggtgataaataccaagcaaaacaagctcatgtcgagttggccgctcgtatgaagaagaga
gatgctggaagtgcaccgagacttggcgatcgtgtaccgtacgtcttcgtggcagctgca
aagaatgtaccagcttacgaacgtgctgaggatcctaccttcgttcttcaaaataatatt
ccgctcgacacaaaacattacttgactaatcagctggctaaacccctcgcaagaattttt
gaaccgattttaggagatagagctgaaaagattctcgtggaaggagaacacacaagagtt
cgaactgtagttcagagtaaagttggaggactcgcagcttttacgaagaaatcggctact
tgtcttggatgtaaaagtgtactgccgaaaatggagtctgaaaatgccgtatgcaagcat
tgtgagccgaaattgccagaaatttatgcatcacgattggtcacaatgcacgaattggaa
aatcactttggtcgtctatggacagaatgtcagaattgtgccaagacaatgcaagacaag
gtcaactgctctgctcgcgattgtccgatctattacatgcgtgaaaaagttcgaaacgaa
ctttcggaaaccaacaccatcatgcagagattcggagacccatgcttcgcgccacctact
aaatag

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