Caenorhabditis remanei (nematode): GCK72_018171
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Entry
GCK72_018171 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq03030
DNA replication
crq03410
Base excision repair
crq03420
Nucleotide excision repair
crq03430
Mismatch repair
crq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCK72_018171
03410 Base excision repair
GCK72_018171
03420 Nucleotide excision repair
GCK72_018171
03430 Mismatch repair
GCK72_018171
03440 Homologous recombination
GCK72_018171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
crq03032
]
GCK72_018171
03400 DNA repair and recombination proteins [BR:
crq03400
]
GCK72_018171
Enzymes [BR:
crq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCK72_018171
DNA replication proteins [BR:
crq03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
GCK72_018171
DNA repair and recombination proteins [BR:
crq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
GCK72_018171
MMR (mismatch excision repair)
DNA polymerase delta complex
GCK72_018171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
POL3_N
divDNApol
baeRF_family3
ABC_sub_bind
Motif
Other DBs
NCBI-GeneID:
9818947
NCBI-ProteinID:
XP_053581344
LinkDB
All DBs
Position
V:8401471..8405124
Genome browser
AA seq
1081 aa
AA seq
DB search
MSTKRPGGASFQPEVKRKRESDEFEQCYVPKFEKELPATPKIDKTGWARPAVDKDLGITK
SIACQVLEVETYHEDGSATTYDRTNVKLYGVTKAGNSICVIVTDYFPHFYFQAPQGFGVE
HIQTAQTAICNMVASAKRRGGSGQNQLPGKVVDNLVHIELVRGENLYYFRGADTKVPFVK
VTGSTEALHKARMELRNGINLMGKGPVNVGNLYESNINDIVKFMAKTNIVGCGWIELPAG
KCQILSNSEKSSRCQIEVSVNVKNLIVHESEGEWADIAPIRTLSLDIECIGRRGVFPEAI
KDPIIQIANLVKIEGETEPFVRNCFVLGTCAPVVGSNIIQCVNEKVLLEKWAEFVREVDP
DIITGYNILNFDLPYILDRAKVLSLPQVSHLGRQKDKGSVVRDAAISSKQMGSRVNKSID
IHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVEHNIIPDLQRGDEQTRRRLAQ
YCLKDAYLPLRLLDKLMSIINYIEMARVTGVPMNFLLTKGQQIKILSMMLRRCKQNNFFL
PVIEVNSGDGEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGV
ENEDYIRTPSGQYFATKSKRHGLLPEILEDLLAARKRAKNFMKNEKDEFKRMVYNGRQLA
LKISANSVYGFTGAVVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALEGKCPADA
KVIYGDTDSVMVKFGVENVAQAMEIGLEAAKEVSKIFTPPIKLEFEKVYFPYLLINKKRY
AGLYFTKPEVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTISD
LLCNKIDISLLIISKELTKSGDKYQAKQAHVELAARMKKRDAGSAPRLGDRVPYVFVAAA
KNVPAYERAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRV
RTVVQSKVGGLAAFTKKSATCLGCKSVLPKMESENAVCKHCEPKLPEIYASRLVTMHELE
NHFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSETNTIMQRFGDPCFAPPT
K
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccaaacgtcccggtggtgcgtcgtttcaaccagaagtcaaacgtaaacgtgag
agtgatgaattcgaacagtgctacgtgccaaaattcgaaaaagaacttcctgccactccc
aaaatcgataaaaccggatgggcgaggccagctgttgataaggatttaggaatcactaaa
agtattgcatgccaagtactcgaagtcgagacttatcacgaggatgggtccgcgactact
tatgacagaactaacgtaaaattgtacggagtgacaaaagcaggaaactcgatctgcgtt
attgtgactgattacttccctcacttttattttcaggcaccacaaggcttcggagtagaa
cacatacaaactgctcaaactgccatttgtaacatggttgcatccgcgaaacgtcgagga
ggaagtggacagaaccaactacctggaaaagtcgttgataatctagttcacattgaattg
gttcggggagagaatctttactattttcgtggcgctgatactaaagttccgtttgttaaa
gtaactggatccacagaagcacttcataaagctcgtatggaactcagaaatggaatcaat
ttgatgggaaaaggacctgtaaatgttggaaatttatatgagtcgaacatcaacgatatc
gttaagttcatggcgaaaacgaatattgtcggatgtggttggattgaacttcctgctgga
aagtgccagattctctcgaacagcgaaaaatcctccaggtgtcaaatagaagtttcggtt
aacgtcaaaaacttgattgttcatgaaagcgaaggagaatgggcagacattgctccgatt
cgtactctctccctggatatcgaatgtattggtcggcggggagtctttcctgaagctatc
aaagatccaattattcaaatcgcgaatcttgttaaaatcgaaggagaaaccgaaccattc
gttcgaaactgttttgtacttggaacatgtgctcctgttgtcggatcgaatattatccag
tgcgtcaatgaaaaagttcttcttgaaaaatgggcggaattcgtacgtgaagttgatcct
gatattatcactggttataatatcctcaacttcgatcttccatacattttggatcgtgca
aaggttctctcgctccctcaagtttcacatttgggtcgacaaaaagataagggatcagtt
gtcagagatgctgctatttcgtcgaaacaaatgggaagtcgagtgaataaaagtattgat
attcacggaagaatcattttcgacgttcttcaagttgttcttcgtgattataaacttcgt
agttacacactaaacagtgtctcctaccagtttctttctgaacaaaaagaagatgtcgaa
cacaatatcattcccgatcttcaacgtggagatgagcaaacaagaagacgtttggctcaa
tattgtttgaaagatgcatatctcccacttcgtttacttgataaactcatgtcaatcatt
aattacattgaaatggcaagagttactggtgttcctatgaatttccttctcacgaaagga
cagcagattaagatcttatcaatgatgctccgacgatgcaagcagaacaatttctttttg
ccagtgattgaagtgaattctggagatggagagggttacgaaggagccactgtcattgat
ccaattcgtggtttctacaatgaaccgattgcaactctcgatttcgcatcgctgtatccg
tccatcatgattgctcataatctctgttacacaactcttctgaaatcaccgcaaggagtt
gaaaatgaagattatattcgaacgccatccggacagtactttgctaccaaatctaagcgt
cacgggctattgcctgaaattctcgaagaccttcttgcagctagaaagcgtgccaaaaat
ttcatgaagaatgagaaagatgaattcaaacggatggtgtacaatggacgacagttggct
ttgaagatttccgccaattcagtctatggcttcactggtgccgttgttggaaagcttccg
tgtctcgaaatttctcaatctgtaactgctttcggaagaaaaatgattgatatgacaaag
tctgaagtagaaagaatttacaagaaaggggctcttgaagggaagtgtcctgcagatgct
aaagtcatttatggagatactgactcggtaatggtgaaattcggagttgaaaatgtggca
caagccatggaaattggacttgaagctgcaaaagaagtcagcaagatcttcactccgcca
attaaactggaattcgagaaagtgtatttcccgtatctactcatcaacaagaaacgttac
gctggtctttacttcactaaacccgaagttcatgacaaaatggactgtaaaggattggaa
actgttcgacgtgataattgtccgctggtcgcgaaagtactcggagtatgtctcgaaaag
cttctgattgaaagagatcaacaatcagcattagatttcgcaaaaagaacaatcagtgat
ttactttgtaacaagattgacatttcactattgattattagcaaagagcttacgaaatca
ggtgataaataccaagcaaaacaagctcatgtcgagttggccgctcgtatgaagaagaga
gatgctggaagtgcaccgagacttggcgatcgtgtaccgtacgtcttcgtggcagctgca
aagaatgtaccagcttacgaacgtgctgaggatcctaccttcgttcttcaaaataatatt
ccgctcgacacaaaacattacttgactaatcagctggctaaacccctcgcaagaattttt
gaaccgattttaggagatagagctgaaaagattctcgtggaaggagaacacacaagagtt
cgaactgtagttcagagtaaagttggaggactcgcagcttttacgaagaaatcggctact
tgtcttggatgtaaaagtgtactgccgaaaatggagtctgaaaatgccgtatgcaagcat
tgtgagccgaaattgccagaaatttatgcatcacgattggtcacaatgcacgaattggaa
aatcactttggtcgtctatggacagaatgtcagaattgtgccaagacaatgcaagacaag
gtcaactgctctgctcgcgattgtccgatctattacatgcgtgaaaaagttcgaaacgaa
ctttcggaaaccaacaccatcatgcagagattcggagacccatgcttcgcgccacctact
aaatag
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