KEGG   Caenorhabditis remanei (nematode): GCK72_021949
Entry
GCK72_021949      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K12589  exosome complex component RRP42
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:crq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GCK72_021949
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:crq03019]
    GCK72_021949
Messenger RNA biogenesis [BR:crq03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     GCK72_021949
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     GCK72_021949
SSDB
Motif
Pfam: RNase_PH RNase_PH_C PALB2_WD40
Other DBs
NCBI-GeneID: 9816246
NCBI-ProteinID: XP_003105290
UniProt: E3MEZ4
LinkDB
Position
V:complement(22039234..22041830)
AA seq 314 aa
MEVHISDDEKLFLIHGVEQDIRNDGRACADFRPMILERGVLSGTNGSCRVQLGQTTDVLA
GIKLELEAYDPIAEKQPKQPMSFHVDFSANASSQFAGKGGDQYGEELSAAFQVAYSRSLD
IIPNLSKTQLAAGYRWKIHVDISVLQWAGSVPDACSLAIIGALSDLEIPEVDVTPDDGGK
VSIVLKRPRIGGDVRDEEVPVAMWKLIVTSCPMLLTVSKIGTANLVDCSPEEECCIRSQL
LIGVAKNLESTPESDDANEYDITCVKQHGGGLLEMESIDDMTKLATRTAKGLYEAIGNRL
NTEERRKPGHSFLL
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaagtacacattagcgacgacgaaaagctattcctaatccacggcgtcgaacaggac
atccggaatgacggacgtgcgtgtgcagattttcgaccgatgattctcgagaggggcgtc
ttgtcgggaacaaatggaagttgtcgagtgcaattgggacagaccactgatgttttggct
ggaatcaagctggaactcgaagcatacgacccgatcgctgagaagcaaccgaaacagccg
atgagtttccacgtggatttctcggctaatgctagcagtcaattcgcgggaaaaggaggt
gatcaatacggtgaagagctctctgcagcctttcaagtcgcctactcccgctcacttgac
atcattccaaacctatcgaaaactcaactggccgccggttatcgctggaaaatccacgtg
gacatttcagtattacaatgggcgggaagtgttccagacgcgtgtagtctcgctatcatt
ggagcgttgagtgatctagagataccagaagtcgatgtgacaccagatgacggtggaaaa
gtgtcgattgtgttgaaacgaccgagaatcggaggagatgtgagagatgaagaggttccc
gtggcgatgtggaagttgattgtgactagctgcccaatgctcctaacagtctcaaaaatt
ggcaccgccaaccttgtcgactgctcgcccgaagaggaatgttgtattcgatctcaacta
ctaattggtgtcgctaagaatctcgagtcaactccagaatccgacgatgccaatgagtac
gacatcacatgtgtcaaacaacacggtggtggtcttctggaaatggaatcgatcgatgat
atgacgaagttggcgacgagaacggcgaaaggattatatgaagcaatcgggaatcggttg
aatacggaggagagaaggaagccgggacactcttttttgctataa

DBGET integrated database retrieval system