Caenorhabditis remanei (nematode): GCK72_023175
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Entry
GCK72_023175 CDS
T09085
Name
(RefSeq) hypothetical protein
KO
K06237
collagen type IV alpha
Organism
crq
Caenorhabditis remanei (nematode)
Pathway
crq04382
Cornified envelope formation
crq04512
ECM-receptor interaction
crq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
GCK72_023175
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
GCK72_023175
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
GCK72_023175
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crq04147
]
GCK72_023175
00536 Glycosaminoglycan binding proteins [BR:
crq00536
]
GCK72_023175
Exosome [BR:
crq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
GCK72_023175
Glycosaminoglycan binding proteins [BR:
crq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
GCK72_023175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
9818398
NCBI-ProteinID:
XP_053578836
UniProt:
A0A2P4WI86
LinkDB
All DBs
Position
X:complement(6162118..6170173)
Genome browser
AA seq
1758 aa
AA seq
DB search
MKQRPAFGPVLRLAILALLAVSYVQSQATCRDCSNRGCFCVGEKGSMGAPGPQGPPGTQG
IRGFPGPEGLSGPKGQKGAQGPPGPNGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPG
WDGCNGTDGAPGIPGRPGPPGMPGFPGPPGMDGLKGEPAIGYAGAPGEKGDGGMPGMPGL
PGPSGRDGYPGEKGDRGDTGDAGPRGPPGEAGPPGNPGIGSIGPKGDPGDLGSVGPPGPP
GPREFTGSGSIVGPRGNSGDKGDKGEPGEGGQRGYPGNGGLPGQPGLPGMKGEKGLSGPA
GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGTPGQKGEAGYPGRDGPKGSSGPPGPPGGG
TFNDGAPGPPGLPGRPGNPGPPGTDGFPGGPGPAGPIGNPGGQGQPGYPGNEGLPGPKGD
KGDSGTPGSPGVSGPPGVPGLSGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGEN
GLPGVRGPPGDSLNGLPGSPGPRGAPGPKGYDGRDGINGLPGAPGSKGDRGGTCSACAPG
TKGEKGLSGYPGQPGPQGDRGLPGMPGPVGDAGDDGLPGPAGRPGSPGPPGQDGFPGLPG
QKGEPTQLVLRPGPPGYPGLKGENGYPGQPGNDGLPGAPGPVGPAGQPGYPGEKGDAGLP
GLSGKPGQDGLPGLPGNKGEAGYGQPGQPGLPGTKGDSGLPGLPGTPGLQGMPGEPAPEN
QVNPAPPGQPGLPGLPGTKGESGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHAGV
PGEKGFGGVPGLPGVPGPKGEVGNAGLPGLSGQKGEPGVGVPGQPGAPGFPGLKGDAGLP
GLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQD
GLPGVPGQKGEDGLPGLPGVTGLKGDSGAPGLSGPPGLPGSPGYPGMKGNAGIPGVPGFK
GDSGIPGLPGLNGPKGEPGVPGMPGNPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLP
GEKGEAGPAARDGQKGEAGLPGQPGLRGPAGPSGLPGVPGFKGEAGLPGYGQPGNAGEKG
LPGIPGKSGRQGAPGSPGQDGLPGFPGLKGEAGYPGQDGLPGRDGLPGVPGMKGDLGTAG
QPGLPGGPGLDGQPGVPGIRGDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLGG
EKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEKGQSGLPG
LPGQPGQSIPGPVGPPGAPGLQGKDGFPGLPGQKGDSGLNGLPGAPGLKGDAGLPGFPGA
KGDPGSNGIPGKRGEDGLPGVPGRDGQPGIPGLKGELGGAGLPGQPGFPGLPGIKGEGGL
PGFPGAKGEPGFPGSPGVPGYAGEKGDGGLPGLPGRDGLPGADGPQGPPGPPGPQNLVEP
GEKGLPGLPGVPGLRGEKGMPGLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLP
GFPGLDGQPGGPGAPGLPGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLL
YIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSASIPMMPV
NEHEIEPYISRCAVCEAPANVIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQ
SLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNL
RTRVSRCQVCVKSTDGRH
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacgaccggctttcgggcccgtgttgcggctggccatattggccttattagct
gtgagctatgtgcaatcgcaagcaacctgcagagattgctcaaaccgaggatgtttctgt
gttggtgaaaaaggatccatgggagcaccaggaccacaaggaccacctggaacccaagga
atccgtggattccctggaccagaaggactttccggaccaaaaggacaaaaaggagctcaa
ggaccacccggaccaaacggaataaagggagatcgtggagccgtcggagtacctggattc
ccaggaaacgatggtggaaacggacgaccaggagagccaggaccaccaggagcacctgga
tgggatggttgtaacggaactgacggagctccaggaattccaggacggccaggaccacca
ggaatgccaggattccccggaccaccaggaatggatggattgaaaggagagccagctatt
ggatacgccggagctccaggagagaaaggagacggtggtatgccaggaatgccaggattg
ccaggaccatccggacgtgatggatatccaggagaaaagggagatcgaggagacactgga
gatgctggaccaagaggaccaccaggagaggctggaccaccaggaaacccaggaatcgga
agcatcggaccaaagggagatcctggagatctaggttctgtcggtccaccaggtccacca
ggaccacgtgagttcactggatccggctcaattgtcggaccgcgcggaaactccggagat
aaaggagacaagggagaaccaggagagggaggacaacgaggatacccaggaaatggagga
ctcccaggacaaccaggactcccaggaatgaagggagagaaaggattgtctggaccagct
ggaccaagaggaaaggaaggacgtccaggaaacgccggaccaccaggattcaagggagac
cgcggtcttgacggactcggtggaatcccaggaactccaggacaaaagggagaagccgga
tacccaggaagagacggaccaaagggtagctctggaccaccaggaccaccaggaggtggt
accttcaatgacggagctccaggaccaccaggattgccaggacgccctggaaatccagga
ccaccaggaactgatggcttcccaggaggcccaggaccagccggaccaattggaaaccca
ggaggacaaggtcaaccaggatacccaggaaacgaaggacttccaggaccaaaaggagat
aagggagacagtggtactccaggatcaccaggagtttctggaccaccaggagttccaggt
ctctcaggaccaaagggagagccaggataccgtggaaccccaggacagagtatcccagga
ctcccaggaaaagacggaaagccaggacttgatggagcaccgggacgcaagggagaaaat
ggattgccgggagtcagaggaccaccaggagactctctcaacggattgccaggatctcca
ggaccacgtggagctccaggaccaaagggatacgacggacgtgatggaatcaacggactt
ccaggagcaccggggtccaagggagacagaggaggcacttgctcagcctgcgctccagga
acaaagggagagaagggattgtccggatacccaggacagccaggaccacaaggagaccgt
ggactcccaggaatgccaggaccagtcggagacgctggagatgatggtcttccaggacca
gccggacgtccaggatctccaggaccaccaggacaagacggattcccaggacttccagga
caaaagggagaaccaactcaactcgttcttcgcccaggaccaccaggatatccaggattg
aagggagagaacggatatccaggacaaccaggaaatgacggactcccaggagctccagga
ccagtcggaccagccggacaaccaggatatccaggagagaagggagacgctggtcttcca
ggtctttctggaaagccaggacaagatggactcccaggactgccaggaaacaagggagaa
gccggatacggacaaccaggacaaccaggattgcccggaacaaagggagactccggactc
ccaggtctcccaggaacaccaggtctccaaggaatgccaggagagccagcaccagaaaac
caagtgaacccagctccaccaggccagccaggacttccaggacttccaggaaccaaggga
gaatccggatacccaggaagaccaggagaagtcggacaaccaggattcccgggattgcca
ggaatgaagggagattccggacttccaggaccaccaggactcccaggacacgctggagtg
ccaggagagaaaggatttggcggagtaccaggacttccaggagtcccaggaccaaaggga
gaagtcggaaatgcaggacttccaggtctttccggacaaaagggagagccaggagtcgga
gtaccaggacaaccaggagccccaggcttcccaggactcaaaggagacgccggtcttcca
ggactcccaggagcaccaggacttgaaggacaacgtggattcccaggagcaccaggactc
aagggagagaacggacttccgggattatcaggacaaccaggatatccaggagagaaggga
gacgctggactcccaggagttccaggacgtgaaggatccccaggattcccaggacaagat
ggactcccaggagttccaggacaaaagggagaagatggacttccaggactcccaggagtt
acaggattgaaaggagactctggcgcaccaggactttctggaccaccaggactgccggga
tcaccaggatacccaggaatgaagggtaacgccggaattccaggagtgccaggattcaag
ggagactccggaatcccaggactgccaggacttaacggaccaaagggagagccaggagtt
ccaggaatgccaggaaaccctggaatgaagggtaacggtggtctgcccggattgccggga
cgtgacggactctccggagtaccaggaatgaagggagaccgcggattcaacggacttccg
ggagagaagggagaagccggaccagctgctagagatggacaaaagggagaagccggtctt
ccaggacaaccaggtctccgtggaccagccggaccatccggactcccaggagtgccagga
ttcaagggagaggctggacttccaggatatggacaaccaggaaacgctggagagaaggga
cttccaggaatcccaggaaaatctggacgtcaaggagcaccaggatcaccaggacaagat
ggacttccaggattcccaggattgaagggagaagctggatatccaggacaagacggactt
ccaggacgtgatggactcccaggagtgccaggaatgaagggagatctcggaacagctgga
cagccaggactcccaggaggaccaggacttgacggacaaccaggagtgccaggaattcgt
ggagacaagggacaatcaggcctcccaggaattccaggagatcgcggaatggacggattc
ccaggacaaaagggagagaacggatatccaggacaaccaggacttccaggactcggagga
gagaaaggattcgccggaactccaggattcccaggactcaagggatccccaggataccca
ggacaagacggacttccaggaatcccaggattgaagggagaatctggatacccaggacaa
ccaggacaagaaggactcccaggactttccggagagaagggacaatctggactcccagga
ctgccaggacaaccaggacaatcgattccaggaccagttggaccaccaggagcacctggt
cttcaaggaaaggatggattcccaggacttccaggacaaaagggagactctggacttaac
ggacttccaggagcaccaggacttaaaggagacgccggtctgccaggattcccaggagcc
aagggagatccaggaagcaacggaattccaggaaaacgtggagaggatggtcttccaggc
gtgccaggaagagacggacaaccaggaattccgggactcaagggagaactcggaggagcc
ggcttgccaggacaaccaggattcccgggacttccaggaatcaagggagaaggaggcctt
ccaggtttccctggagccaagggagagccaggattcccaggatcgccaggagttccagga
tacgctggagagaagggagacggaggtcttccaggtcttccaggaagagacggactccca
ggagctgacggaccacaaggaccacctggaccaccaggaccacaaaaccttgtcgagcca
ggagagaagggacttccaggtctcccaggagttccaggactccgcggagaaaagggaatg
ccgggactcgatggaccaccaggaaatgacggaccaccaggactcccaggacaacgcgga
aacgacggatacccaggagcgccaggactttctggagaaaagggaatgggaggacttcca
ggattcccaggacttgacggacaaccaggaggaccaggagccccaggtctcccaggagcc
ccaggagccgccggaccagcctacagagacggattcgttcttgtcaagcactctcaaacc
accgaggtgccaagatgtcctgagggtcaaaccaagctttgggacggatattccttgttg
tacattgaaggaaacgagaaatcccataaccaagacctcggacacgctggatcctgcctc
caaagattctccaccatgccattcttgttctgcgacttcaataacgtctgcaactacgca
tccagaaatgacaaatcgtactggctctctacctctgcttctatcccaatgatgccagtc
aacgagcatgaaatcgagccatacatttctcgttgcgccgtctgcgaagccccagccaac
gtcatcgccgtccactctcaaacaatccaaattccaaactgccctgcaggatggagcagc
ttgtggatcggatattcattcgccatgcacaccggagccggagcagagggaggtggtcaa
tctctctcttctccaggatcctgcttagaagacttccgtgccactccattcatcgagtgt
aacggtgctcgcggatcttgccactatttcgccaacaagttctcattctggctcactacc
attgacaatgactctgagttcaaggtaccggagagtcaaacactcaaatcaggaaacctc
cgtacccgtgtctcaagatgccaagtttgcgtcaaatcgaccgacggacgtcattaa
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integrated database retrieval system