KEGG   Caenorhabditis remanei (nematode): GCK72_023175
Entry
GCK72_023175      CDS       T09085                                 
Name
(RefSeq) hypothetical protein
  KO
K06237  collagen type IV alpha
Organism
crq  Caenorhabditis remanei (nematode)
Pathway
crq04382  Cornified envelope formation
crq04512  ECM-receptor interaction
crq04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:crq00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    GCK72_023175
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    GCK72_023175
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    GCK72_023175
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:crq04147]
    GCK72_023175
   00536 Glycosaminoglycan binding proteins [BR:crq00536]
    GCK72_023175
Exosome [BR:crq04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   GCK72_023175
Glycosaminoglycan binding proteins [BR:crq00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   GCK72_023175
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 9818398
NCBI-ProteinID: XP_053578836
UniProt: A0A2P4WI86
LinkDB
Position
X:complement(6162118..6170173)
AA seq 1758 aa
MKQRPAFGPVLRLAILALLAVSYVQSQATCRDCSNRGCFCVGEKGSMGAPGPQGPPGTQG
IRGFPGPEGLSGPKGQKGAQGPPGPNGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPG
WDGCNGTDGAPGIPGRPGPPGMPGFPGPPGMDGLKGEPAIGYAGAPGEKGDGGMPGMPGL
PGPSGRDGYPGEKGDRGDTGDAGPRGPPGEAGPPGNPGIGSIGPKGDPGDLGSVGPPGPP
GPREFTGSGSIVGPRGNSGDKGDKGEPGEGGQRGYPGNGGLPGQPGLPGMKGEKGLSGPA
GPRGKEGRPGNAGPPGFKGDRGLDGLGGIPGTPGQKGEAGYPGRDGPKGSSGPPGPPGGG
TFNDGAPGPPGLPGRPGNPGPPGTDGFPGGPGPAGPIGNPGGQGQPGYPGNEGLPGPKGD
KGDSGTPGSPGVSGPPGVPGLSGPKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGEN
GLPGVRGPPGDSLNGLPGSPGPRGAPGPKGYDGRDGINGLPGAPGSKGDRGGTCSACAPG
TKGEKGLSGYPGQPGPQGDRGLPGMPGPVGDAGDDGLPGPAGRPGSPGPPGQDGFPGLPG
QKGEPTQLVLRPGPPGYPGLKGENGYPGQPGNDGLPGAPGPVGPAGQPGYPGEKGDAGLP
GLSGKPGQDGLPGLPGNKGEAGYGQPGQPGLPGTKGDSGLPGLPGTPGLQGMPGEPAPEN
QVNPAPPGQPGLPGLPGTKGESGYPGRPGEVGQPGFPGLPGMKGDSGLPGPPGLPGHAGV
PGEKGFGGVPGLPGVPGPKGEVGNAGLPGLSGQKGEPGVGVPGQPGAPGFPGLKGDAGLP
GLPGAPGLEGQRGFPGAPGLKGENGLPGLSGQPGYPGEKGDAGLPGVPGREGSPGFPGQD
GLPGVPGQKGEDGLPGLPGVTGLKGDSGAPGLSGPPGLPGSPGYPGMKGNAGIPGVPGFK
GDSGIPGLPGLNGPKGEPGVPGMPGNPGMKGNGGLPGLPGRDGLSGVPGMKGDRGFNGLP
GEKGEAGPAARDGQKGEAGLPGQPGLRGPAGPSGLPGVPGFKGEAGLPGYGQPGNAGEKG
LPGIPGKSGRQGAPGSPGQDGLPGFPGLKGEAGYPGQDGLPGRDGLPGVPGMKGDLGTAG
QPGLPGGPGLDGQPGVPGIRGDKGQSGLPGIPGDRGMDGFPGQKGENGYPGQPGLPGLGG
EKGFAGTPGFPGLKGSPGYPGQDGLPGIPGLKGESGYPGQPGQEGLPGLSGEKGQSGLPG
LPGQPGQSIPGPVGPPGAPGLQGKDGFPGLPGQKGDSGLNGLPGAPGLKGDAGLPGFPGA
KGDPGSNGIPGKRGEDGLPGVPGRDGQPGIPGLKGELGGAGLPGQPGFPGLPGIKGEGGL
PGFPGAKGEPGFPGSPGVPGYAGEKGDGGLPGLPGRDGLPGADGPQGPPGPPGPQNLVEP
GEKGLPGLPGVPGLRGEKGMPGLDGPPGNDGPPGLPGQRGNDGYPGAPGLSGEKGMGGLP
GFPGLDGQPGGPGAPGLPGAPGAAGPAYRDGFVLVKHSQTTEVPRCPEGQTKLWDGYSLL
YIEGNEKSHNQDLGHAGSCLQRFSTMPFLFCDFNNVCNYASRNDKSYWLSTSASIPMMPV
NEHEIEPYISRCAVCEAPANVIAVHSQTIQIPNCPAGWSSLWIGYSFAMHTGAGAEGGGQ
SLSSPGSCLEDFRATPFIECNGARGSCHYFANKFSFWLTTIDNDSEFKVPESQTLKSGNL
RTRVSRCQVCVKSTDGRH
NT seq 5277 nt   +upstreamnt  +downstreamnt
atgaagcaacgaccggctttcgggcccgtgttgcggctggccatattggccttattagct
gtgagctatgtgcaatcgcaagcaacctgcagagattgctcaaaccgaggatgtttctgt
gttggtgaaaaaggatccatgggagcaccaggaccacaaggaccacctggaacccaagga
atccgtggattccctggaccagaaggactttccggaccaaaaggacaaaaaggagctcaa
ggaccacccggaccaaacggaataaagggagatcgtggagccgtcggagtacctggattc
ccaggaaacgatggtggaaacggacgaccaggagagccaggaccaccaggagcacctgga
tgggatggttgtaacggaactgacggagctccaggaattccaggacggccaggaccacca
ggaatgccaggattccccggaccaccaggaatggatggattgaaaggagagccagctatt
ggatacgccggagctccaggagagaaaggagacggtggtatgccaggaatgccaggattg
ccaggaccatccggacgtgatggatatccaggagaaaagggagatcgaggagacactgga
gatgctggaccaagaggaccaccaggagaggctggaccaccaggaaacccaggaatcgga
agcatcggaccaaagggagatcctggagatctaggttctgtcggtccaccaggtccacca
ggaccacgtgagttcactggatccggctcaattgtcggaccgcgcggaaactccggagat
aaaggagacaagggagaaccaggagagggaggacaacgaggatacccaggaaatggagga
ctcccaggacaaccaggactcccaggaatgaagggagagaaaggattgtctggaccagct
ggaccaagaggaaaggaaggacgtccaggaaacgccggaccaccaggattcaagggagac
cgcggtcttgacggactcggtggaatcccaggaactccaggacaaaagggagaagccgga
tacccaggaagagacggaccaaagggtagctctggaccaccaggaccaccaggaggtggt
accttcaatgacggagctccaggaccaccaggattgccaggacgccctggaaatccagga
ccaccaggaactgatggcttcccaggaggcccaggaccagccggaccaattggaaaccca
ggaggacaaggtcaaccaggatacccaggaaacgaaggacttccaggaccaaaaggagat
aagggagacagtggtactccaggatcaccaggagtttctggaccaccaggagttccaggt
ctctcaggaccaaagggagagccaggataccgtggaaccccaggacagagtatcccagga
ctcccaggaaaagacggaaagccaggacttgatggagcaccgggacgcaagggagaaaat
ggattgccgggagtcagaggaccaccaggagactctctcaacggattgccaggatctcca
ggaccacgtggagctccaggaccaaagggatacgacggacgtgatggaatcaacggactt
ccaggagcaccggggtccaagggagacagaggaggcacttgctcagcctgcgctccagga
acaaagggagagaagggattgtccggatacccaggacagccaggaccacaaggagaccgt
ggactcccaggaatgccaggaccagtcggagacgctggagatgatggtcttccaggacca
gccggacgtccaggatctccaggaccaccaggacaagacggattcccaggacttccagga
caaaagggagaaccaactcaactcgttcttcgcccaggaccaccaggatatccaggattg
aagggagagaacggatatccaggacaaccaggaaatgacggactcccaggagctccagga
ccagtcggaccagccggacaaccaggatatccaggagagaagggagacgctggtcttcca
ggtctttctggaaagccaggacaagatggactcccaggactgccaggaaacaagggagaa
gccggatacggacaaccaggacaaccaggattgcccggaacaaagggagactccggactc
ccaggtctcccaggaacaccaggtctccaaggaatgccaggagagccagcaccagaaaac
caagtgaacccagctccaccaggccagccaggacttccaggacttccaggaaccaaggga
gaatccggatacccaggaagaccaggagaagtcggacaaccaggattcccgggattgcca
ggaatgaagggagattccggacttccaggaccaccaggactcccaggacacgctggagtg
ccaggagagaaaggatttggcggagtaccaggacttccaggagtcccaggaccaaaggga
gaagtcggaaatgcaggacttccaggtctttccggacaaaagggagagccaggagtcgga
gtaccaggacaaccaggagccccaggcttcccaggactcaaaggagacgccggtcttcca
ggactcccaggagcaccaggacttgaaggacaacgtggattcccaggagcaccaggactc
aagggagagaacggacttccgggattatcaggacaaccaggatatccaggagagaaggga
gacgctggactcccaggagttccaggacgtgaaggatccccaggattcccaggacaagat
ggactcccaggagttccaggacaaaagggagaagatggacttccaggactcccaggagtt
acaggattgaaaggagactctggcgcaccaggactttctggaccaccaggactgccggga
tcaccaggatacccaggaatgaagggtaacgccggaattccaggagtgccaggattcaag
ggagactccggaatcccaggactgccaggacttaacggaccaaagggagagccaggagtt
ccaggaatgccaggaaaccctggaatgaagggtaacggtggtctgcccggattgccggga
cgtgacggactctccggagtaccaggaatgaagggagaccgcggattcaacggacttccg
ggagagaagggagaagccggaccagctgctagagatggacaaaagggagaagccggtctt
ccaggacaaccaggtctccgtggaccagccggaccatccggactcccaggagtgccagga
ttcaagggagaggctggacttccaggatatggacaaccaggaaacgctggagagaaggga
cttccaggaatcccaggaaaatctggacgtcaaggagcaccaggatcaccaggacaagat
ggacttccaggattcccaggattgaagggagaagctggatatccaggacaagacggactt
ccaggacgtgatggactcccaggagtgccaggaatgaagggagatctcggaacagctgga
cagccaggactcccaggaggaccaggacttgacggacaaccaggagtgccaggaattcgt
ggagacaagggacaatcaggcctcccaggaattccaggagatcgcggaatggacggattc
ccaggacaaaagggagagaacggatatccaggacaaccaggacttccaggactcggagga
gagaaaggattcgccggaactccaggattcccaggactcaagggatccccaggataccca
ggacaagacggacttccaggaatcccaggattgaagggagaatctggatacccaggacaa
ccaggacaagaaggactcccaggactttccggagagaagggacaatctggactcccagga
ctgccaggacaaccaggacaatcgattccaggaccagttggaccaccaggagcacctggt
cttcaaggaaaggatggattcccaggacttccaggacaaaagggagactctggacttaac
ggacttccaggagcaccaggacttaaaggagacgccggtctgccaggattcccaggagcc
aagggagatccaggaagcaacggaattccaggaaaacgtggagaggatggtcttccaggc
gtgccaggaagagacggacaaccaggaattccgggactcaagggagaactcggaggagcc
ggcttgccaggacaaccaggattcccgggacttccaggaatcaagggagaaggaggcctt
ccaggtttccctggagccaagggagagccaggattcccaggatcgccaggagttccagga
tacgctggagagaagggagacggaggtcttccaggtcttccaggaagagacggactccca
ggagctgacggaccacaaggaccacctggaccaccaggaccacaaaaccttgtcgagcca
ggagagaagggacttccaggtctcccaggagttccaggactccgcggagaaaagggaatg
ccgggactcgatggaccaccaggaaatgacggaccaccaggactcccaggacaacgcgga
aacgacggatacccaggagcgccaggactttctggagaaaagggaatgggaggacttcca
ggattcccaggacttgacggacaaccaggaggaccaggagccccaggtctcccaggagcc
ccaggagccgccggaccagcctacagagacggattcgttcttgtcaagcactctcaaacc
accgaggtgccaagatgtcctgagggtcaaaccaagctttgggacggatattccttgttg
tacattgaaggaaacgagaaatcccataaccaagacctcggacacgctggatcctgcctc
caaagattctccaccatgccattcttgttctgcgacttcaataacgtctgcaactacgca
tccagaaatgacaaatcgtactggctctctacctctgcttctatcccaatgatgccagtc
aacgagcatgaaatcgagccatacatttctcgttgcgccgtctgcgaagccccagccaac
gtcatcgccgtccactctcaaacaatccaaattccaaactgccctgcaggatggagcagc
ttgtggatcggatattcattcgccatgcacaccggagccggagcagagggaggtggtcaa
tctctctcttctccaggatcctgcttagaagacttccgtgccactccattcatcgagtgt
aacggtgctcgcggatcttgccactatttcgccaacaagttctcattctggctcactacc
attgacaatgactctgagttcaaggtaccggagagtcaaacactcaaatcaggaaacctc
cgtacccgtgtctcaagatgccaagtttgcgtcaaatcgaccgacggacgtcattaa

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