Crassaminicella thermophila: FQB35_04080
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Entry
FQB35_04080 CDS
T06186
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
crs
Crassaminicella thermophila
Brite
KEGG Orthology (KO) [BR:
crs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crs03009
]
FQB35_04080 (rlmD)
Enzymes [BR:
crs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FQB35_04080 (rlmD)
Ribosome biogenesis [BR:
crs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FQB35_04080 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
PrmA
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
Methyltransf_32
Methyltransf_4
RrnaAD
PCMT
FtsJ
UPF0020
2B_soluble
Motif
Other DBs
NCBI-ProteinID:
QEK13580
UniProt:
A0A5C0SHA7
LinkDB
All DBs
Position
899581..900939
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AA seq
452 aa
AA seq
DB search
MVKKDQIYSMKIEDIGHKGEGIGKIEGFTVFADGGIVGDLVKVKITVVKKNYAVGKIIKI
EEPSPDRIDPICSIAYVCGGCQIQHMDYSGQLRIKEKKVKDNLERIGKLKNVTIHKVLGM
TNPYRYRNKAQFPVGTADKSVIGFYKRKTHDIVDIETCHIQHDVNDKIIKIIRDYINKHK
ISTYDEKTGKGLIRHILTKVGFTTGEIMVVIITNGKNLPNKGELIEALLDEIPQIKSIVQ
NINTKRTNRILGQECITLYGEDKIVDYIGDLKFNISPLSFFQVNPIQTKVLYEKALEFAD
LNGEETVYDIYCGIGTISLFLAQKAKYVHGIEIVDEAIQDAKENARINGIENVNFYTGAA
EEVVPKLYEKGLKADVVVLDPPRKGCDEKVLDTIVNMNPERIVYVSCNPSTLARDLKYLD
EKGYKAVEVQPVDMFPHTMHVESVVLIKRKHS
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atagtgaaaaaagatcaaatttattctatgaaaattgaagatataggacataaaggagaa
ggtattggaaaaatagaaggttttactgtttttgctgatggcggcatagtaggggatttg
gtaaaggtaaaaataacagttgttaagaagaattatgcagtaggaaaaattataaaaatt
gaagagccatcccctgatagaatagaccctatttgttcaattgcatatgtttgtggaggt
tgtcaaatccagcatatggattattcaggacaattaagaataaaagaaaaaaaagtaaaa
gataatttagaaagaattgggaaattaaaaaatgtaacaattcataaagtactaggaatg
actaatccttatagatatcgtaataaagcacaatttccagtaggaacagcagataaaagt
gtgattggattttacaaaagaaagacacatgatattgtcgacattgaaacttgccatata
cagcatgatgtcaatgataaaattataaaaattataagggattatataaataaacataaa
atttctacctatgatgaaaaaacaggaaaaggacttataaggcatatattaacaaaggtt
ggatttactactggagaaattatggttgtaattattacaaacggaaaaaatttaccaaat
aaaggagaacttatagaagctttattagatgaaataccacaaataaagagtattgtacaa
aatataaatacaaaaagaacaaataggattcttggacaagaatgtattactttgtatgga
gaagataaaattgtagattatataggtgatttaaaatttaatatttctcctttatctttt
tttcaagtgaatcctatacaaacaaaggttttatatgaaaaagctttagaatttgcagat
ttaaatggagaagagactgtatatgatatttattgcgggattggtaccatatcattattt
ttagctcaaaaagcaaagtatgtacatggtattgaaattgtagatgaagcaatacaggat
gctaaagaaaatgcaagaatcaatggaatagaaaatgttaatttttatactggagcagca
gaagaggttgtaccaaagctttatgaaaaaggcctaaaggcagatgtagtagtactagat
ccaccaagaaaaggatgcgatgagaaagtattagatactattgttaatatgaatccagaa
agaattgtatatgtttcttgtaatccaagtactttggcaagagatttaaaatatcttgat
gagaaaggatataaagcagtagaagtacagccagtagatatgtttccacatactatgcat
gtggagtcagtagtattgattaaaagaaaacacagctag
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