Clostridium felsineum DSM 7320: CROST_042700
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Entry
CROST_042700 CDS
T08192
Symbol
dbpA_2
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
crw
Clostridium felsineum DSM 7320
Pathway
crw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CROST_042700 (dbpA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crw03019
]
CROST_042700 (dbpA_2)
03400 DNA repair and recombination proteins [BR:
crw03400
]
CROST_042700 (dbpA_2)
Enzymes [BR:
crw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CROST_042700 (dbpA_2)
Messenger RNA biogenesis [BR:
crw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CROST_042700 (dbpA_2)
DNA repair and recombination proteins [BR:
crw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CROST_042700 (dbpA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FERM_F2
Motif
Other DBs
NCBI-ProteinID:
URZ13504
UniProt:
A0A1S8LPR7
LinkDB
All DBs
Position
complement(4626597..4629884)
Genome browser
AA seq
1095 aa
AA seq
DB search
MIENKIQEIISEVGKSIIILKGFNVTEMPYKNKYFSFHIDYYDKVNLDTIREQVVDEIID
NRKFDFDYKWMTIEEYQLFKEQSAINKMPVVVLENNLYDKQFPYRGTLCNVDDIYHYLYY
QEDSELEPEQEKVLKNVSFFYGKIDYSKQSGNYFVTYIEFEEEISRYKLYKDIPVKVDFS
LEHPLDNTQQIELSEDEIPFLDLETEILSDNSKHNIVLVLSGSSDSLPNRYLERLNILSK
LKDINIFFDMLSIRRQIIKNEESYVKILKDVYGYDSYKEIPFYKNIESHSKETINISQAQ
IIDDIITQAEKAMHGEAFKDVYITAFTGAGKSLMFQIPALYLAEKYVNDKPLTLIISPLI
GLMNDQVDNMRRKGVTSSATINGNTPPFEKEKILERVQNQEVELLYLSPETLQARSDIKM
LIGDRNIGVVIIDEAHIVTTWGKSFRADYWYLGIYLAKLRKKYKFPIVTFTATAIYGGRE
DMYWDTRNTLNMISPISYFGYVRRDNLLMNVRSSEKNLDAEGRDYRKTKNALALKHLKMA
LKNKQKSLLYFPTVKLLIDFYNFVVQNESKIAEKTGKYYGTLQKEEKDEVLSEYKSGELQ
FVLATKAFGMGIDIPDITNVYHYAPTGNVVDYIQEIGRAARDKPKVGFGMIDFLSRDMNE
VKQLHGMSAIRKTQILEVMRKVLSIYKEKGNNRNLIISPEDFKYIFVQNKRDEDSLDNKV
KTVLLMIEKDFSSSNKIGYSPFVARPRSLFGNDLIFVTPELESQFSKSRLGKFFSKEFDF
NSNTYSAVYQVNLSGIWEKYYKNMSFPSFKFALFNQDEMEKLQHKNLFEKFIYTSGIEVS
FNSDISVQNLLSQYKIILKSFESFLNEQKITGRQFTVIDLGNHFMKTLKIADKFEARSFA
QTIINSAFEFGKIKEIKFISERTNSNADNQRYIIHQDSDIFSKFIMSSITNTLNPSDNYV
IGVDKITSFHFRFHGDDIDAKIAALGIGEARKMLSYQVIGGNNPQIYLRINSIYPLERAI
KQGDFYQNSILKDVQVKHYTSVEMLKFLFTKEQPETSQKERILNYSKWFWDNIENYFMGI
LPNEVKDVLSKKFKS
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaaataaaattcaagaaattataagtgaagtgggaaagtcaataataatattg
aaaggtttcaatgtgactgagatgccatataaaaataaatatttctcttttcatattgat
tactatgataaggtaaacctagatacaattcgtgaacaagttgtggatgaaattattgat
aacaggaaatttgattttgattacaagtggatgactatagaggagtaccaactatttaag
gaacaatcggctattaataagatgcctgtagttgtattagaaaataacctatatgacaag
cagtttccttaccgaggtacattatgtaatgttgatgatatttatcattacttatattat
caggaagatagtgagcttgagccagagcaggagaaagtactaaaaaatgtttcattcttc
tatggtaaaattgactattcaaaacaaagcggaaattattttgtaacttatatagaattt
gaagaagaaattagtagatataaattatataaagatattccagtaaaggttgatttctct
cttgagcatccactagacaatactcaacagatagaactttccgaagatgaaattcctttt
ctagatttagaaacagaaatactaagtgataatagtaaacacaatattgtgttagtatta
tctggttcttcagatagtttacctaatagatacttggagcgccttaatattctttctaag
ttaaaggatatcaacatatttttcgatatgctttcaattagacgacaaattattaaaaat
gaagaaagttatgtgaagatattaaaagatgtttatggatatgacagttataaagaaata
cctttttataagaatattgaaagtcattctaaagaaacaataaatatctcacaagcccaa
atcatagatgatattataactcaagcagaaaaagcaatgcatggggaagcgtttaaagat
gtttatattacagcttttacgggtgctggtaaatcacttatgttccaaattccagcgttg
tatctagcagagaaatatgttaatgataagccgcttactttaattatatcacctttgatt
ggtttgatgaatgatcaggttgataacatgcgacgtaaaggggtgacctcttctgcaaca
atcaatggtaatacacctccgtttgaaaaagaaaaaattttagagagagtgcaaaatcaa
gaagtggagttactgtatttatctccagagactctacaggctagaagtgacattaaaatg
ttgattggtgatagaaatatcggggtagtcattattgatgaagctcatattgtgacaact
tgggggaaatccttcagagctgattattggtatttgggtatttatcttgcgaaactaaga
aaaaaatataaatttccaattgtcaccttcacagctactgccatatatggtggtagggaa
gatatgtattgggacacgagaaatactttgaatatgataagtccgatttcatattttggc
tatgtaagacgtgataatctattgatgaatgttagaagtagtgagaagaatcttgatgca
gagggtcgagactatagaaaaacgaaaaatgcacttgctttgaaacatttaaaaatggct
ttgaaaaataaacagaagtcattactctattttccaactgtgaaattgttaatagatttc
tataactttgtggttcagaatgaatctaaaattgcagaaaagacaggcaaatactatggt
actttgcaaaaagaagagaaggatgaggtgctatcggaatacaaatccggagaacttcaa
tttgtgcttgccactaaggcttttggtatgggaattgatattcctgatatcacgaatgtt
taccattatgctccgactggaaatgtagttgactatattcaagaaattggtcgtgctgca
cgtgataaacctaaagttggatttgggatgattgattttttatctcgagatatgaacgaa
gttaagcaacttcatggtatgtcagcaataagaaagactcaaattctagaagtaatgcgt
aaggtactgtctatatacaaagaaaaggggaataatcgtaacttaatcattagtccagaa
gactttaagtacatttttgttcaaaataaacgtgatgaggattctcttgataacaaagtt
aaaactgtactgttaatgattgaaaaagatttttcgtcttcaaataagattggatattca
ccgtttgtagctcgtcctagaagccttttcggaaatgacttaattttcgtgacaccagaa
ttggagtctcagttttcaaaatcgcgattaggcaaatttttctcgaaagagttcgatttc
aatagcaacacatactcggctgtctatcaagtaaatcttagtggaatttgggaaaagtac
tataagaatatgtcgtttccaagtttcaaatttgctctatttaatcaagatgagatggaa
aaattgcaacacaaaaatttgtttgagaaatttatctatacttctggtattgaggtttca
tttaacagtgatatttcagtacaaaatcttttatctcaatataaaataatcttaaaatca
tttgagagttttttaaatgaacaaaaaataactggtagacagtttacagttattgatttg
ggcaatcattttatgaagaccttaaagattgctgataagtttgaagctagatcttttgca
caaactattatcaattcggcctttgaattcggaaaaatcaaagaaattaagtttatttct
gaacgtacaaatagtaatgctgataatcaaagatatattatacatcaagatagtgatatt
ttctcaaaatttattatgagttcaataacgaacaccttgaatccgagtgataattatgta
attggcgtagataagattacctcattccactttaggtttcatggcgatgatattgatgca
aaaattgctgcgttaggtattggtgaagcaagaaagatgttaagttatcaggttattggt
ggtaataatccacaaatttatttacgtataaactcgatatatccacttgaaagggctatt
aagcaaggggacttttaccaaaatagcattttgaaagacgttcaggttaaacattacact
agtgtagaaatgcttaaatttttgtttactaaggaacaaccagaaacatcacaaaaggag
agaattctcaattattcaaaatggttttgggacaatattgagaattactttatgggaatc
cttccaaatgaagttaaagatgtattatcaaaaaaatttaaaagttga
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