Cryobacterium sp. LW097: B7495_11760
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Entry
B7495_11760 CDS
T04908
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cry
Cryobacterium sp. LW097
Pathway
cry03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7495_11760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cry03400
]
B7495_11760 (mfd)
Enzymes [BR:
cry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7495_11760 (mfd)
DNA repair and recombination proteins [BR:
cry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B7495_11760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
Cas3-like_C_2
DUF3638
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ASD22671
UniProt:
A0AAC9X580
LinkDB
All DBs
Position
complement(2515584..2519219)
Genome browser
AA seq
1211 aa
AA seq
DB search
MILQGLIPALSRASTFDAALAFAARDADFSLTEGLRAPLLAALLEQRDRLDKGRALLIIT
ATGRESEALRENLGCFSDDAEIVEFPAWETLPHERLSPSAEIVGRRLYALRRMRDWEATD
AATRRPLIVVASVRAALQPVADNLTDYDPLELTAGGRGHDLAAIAVDLVNVAYARVDMVT
RRGEFAVRGGILDVFPPMAAHPYRIEFFGDEVEQIRAFAVADQRSMPEPIESVTLPPSRE
LLLSPAVRQRAREMQHEFPSLAGLLAKVAEGIPVEGMESLAPALVDRLVPVTHYLPRQAA
VAVISPERVASRAISLAETNREFLSAAWNAATAGAEAPIDLASGDFLTLGTLRDAVRYSA
PGAGASERVWWTLSSFQAAPTDIPVLPEHREIDELLTIRIEGDAVPSFAGSVEGAVGHLS
TRLKDGWTVAVVAQGAGLVDRAADVLSGAELPARIVEEFPANPEPGIAYLIKASITHGFE
IPETKLTLVSESEFYGRTVGYDARQIKKLASRRKNVVDPLQLKTGDHVVHQTHGIGKFLE
LTQREVSSGGRNPVKTTREYLVLEYAPSKRGHGGDKLYVPTDQLDLVSRYVGGEAPALSK
MGGSDWSAAKTKARRAVRDIAVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPD
QLTTIEEVKADMERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQ
HMETFQERFAGFPIHLRALSRFQTDKESRETVAGMLDGTVDMVIGTHRLLSENTIFKDLG
LVIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRH
PILTFVGPYSDRQVAAAIRRELLREGQIFFVHNRVSSINRVAAQLAELVPEARVAVAHGQ
LPEAQLEQVVVDFWENKFDILVSTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVG
RARERAYAYFLYDENKPLSEIAHDRLATIAANNELGAGMQVALKDLEIRGAGNLLGGEQA
GHIAGVGFDLYLRMIGEAVSTFRGDVAEGQTELRLELPVDAHISEEYVDSERLRLEAYQK
LSGASGLAAADDQIGLVLEELTDRYGEPPEAVTNLIAVSRLRRHAQQSGLGEVVAMGSNL
RVAPVDLADSMQVRVQRMYPGAKYSAAAGSMIVPLPRLNGEPLADAALIAWTGSLLDAVF
PRPVDTAVPAH
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgattcttcagggcttgattccggcgctttcgcgtgcctccacgttcgatgccgccctc
gcctttgcggcccgtgacgccgacttctcgctcaccgagggcctccgcgccccgctgctg
gccgcgctgctcgagcagcgcgacaggttggacaagggccgggcgctgttgatcatcacc
gccaccggccgtgagtccgaggcgctgcgggagaacctgggctgcttctccgacgacgcc
gagatcgtcgagttccccgcctgggagaccctgccgcacgagaggctcagccccagcgcc
gagatcgtgggccgccgcctctacgccctgaggcggatgcgcgactgggaggccacggac
gccgccacccggcgtcccctcatcgtggtggcctcggtgcgcgccgccctgcagcctgtg
gccgacaacctcaccgactacgacccgctcgagctcaccgccggaggccgcggccacgac
ctcgccgccatcgccgtcgacctcgtcaacgtggcgtacgcccgagtggacatggtcacc
cggcgcggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgccgatggccgcg
cacccgtaccgcatcgagttcttcggtgacgaggtcgagcagatccgcgccttcgcggtc
gccgaccagcgctcgatgcccgaacccatcgagtcggtgaccctgccgcccagccgcgaa
ctgctgctcagccccgccgtgcgccagcgcgcccgggagatgcaacacgagttccccagc
ctggcgggtctgctcgccaaggtggccgagggcatccccgtcgagggcatggagagcctc
gcgcccgccctcgtcgacaggctggtgcccgtcacgcactacctgccccgccaggccgcc
gtcgccgtgatctcgccggaacgggtcgcctctcgcgccatcagcctcgccgagaccaac
cgggagttcctctccgccgcctggaacgccgccaccgccggcgccgaggcccccatcgac
ctcgccagcggtgacttcctcaccctgggcaccctgcgcgacgccgtgcggtactcggcc
cccggcgccggggccagcgaacgggtctggtggacgttgagctccttccaggccgcgccc
accgacatcccggtgctgcccgaacaccgcgagatcgacgaactgctcaccatccgcatc
gagggcgacgccgtgccgagcttcgccggcagcgtcgagggcgccgtcgggcacctctcc
acgcgcctcaaggacggttggaccgtcgccgtggtcgcgcagggcgccggcctcgtcgac
cgcgccgccgacgtcctctccggcgccgaactgcccgcccgcatcgtggaggagttcccg
gcgaacccggaaccgggcatcgcctacctgatcaaggcctccatcactcacgggttcgag
atccccgagaccaagctcaccctggtcagcgagagcgagttctacggccgcaccgtcggt
tacgacgcccgccagatcaagaagctcgccagtcggcgcaagaacgtcgtcgatccgttg
cagctcaagaccggcgaccacgtcgtgcaccagacccacggcatcggcaagttcctcgaa
ctcacccagcgtgaggtctccagcggcggccgcaacccggtcaagaccacccgcgaatac
ctggtgctcgagtacgcgccgtccaagcgcggtcacggcggcgacaagctctacgtgccc
accgaccagctcgacctggtctcccgctacgtcggcggcgaggcacccgcgctgtccaag
atgggcggcagcgactggtcggccgccaagacaaaggcccggcgggcggtgcgcgacatc
gccgtcgaactcgtcaagctctactcggcacggatggccagcaagggtcacgcattcggc
cctgacaccccgtggcagcgtgagctcgaggaggcgttcccgttcgcggagacgcccgac
cagctcaccaccatcgaggaggtcaaggccgacatggagcggcccatcccgatggaccgg
ttgctgtccggtgacgtgggcttcggcaagaccgaggtcgccgtgcgcgcagcgttcaag
gccatccaggacggcaagcaggtggccatgctcgtgccgaccaccctgctcgtgcgccag
cacatggagaccttccaggagcgcttcgccgggttccccatccacctgcgggcgctcagc
cggttccagaccgacaaggaatcccgcgagaccgtggccggcatgctcgacggcaccgtc
gacatggtcatcggcacccaccggctgttgtcggagaacacgatcttcaaggacctcggc
ctggtcatcatcgacgaggaacagcgtttcggtgtcgagcacaaggacgctctcaagaag
ctcaagaccaacgtcgacatcctcgccatgagcgccacgcccatcccgcgcaccctggag
atggccgtcacgggcatccgggagatgtccaccctggccaccccgccggaggaccggcac
ccgatcctcaccttcgtcgggccgtactccgaccgccaggtggccgccgccatccgccgc
gaactgcttcgcgagggccagatcttcttcgtgcataaccgcgtctccagcatcaaccgg
gtggccgcgcagctggccgaactggtgccggaagcccgcgtcgccgtggcgcacgggcag
ctgccggaggcgcagctggaacaggtggtggtggacttctgggagaacaagttcgacatc
ctggtctccacgaccatcatcgagaccggcctggacatcgccaacgcaaacaccatcatc
atcgacagggccgacaagtacgggctcagccagctgcaccagctgcgcggccgggtcggc
cgtgcccgggagcgtgcatacgcctacttcctctacgacgagaacaagccactctccgag
atcgcgcacgacaggctggcaaccatcgcggccaacaacgaactcggcgccggcatgcag
gtggcgctgaaggacctcgagatccgcggtgcgggcaacctgctcggcggggagcaggcc
ggtcacatcgccggggtcggcttcgacctctacctgcgcatgatcggcgaggccgtgtcg
accttccgcggtgacgtggccgagggccagacggagctgcggctggagctgcccgtggac
gcgcacatctccgaggagtacgtggacagcgagcggctgcgcctggaggcgtatcagaag
ctctccggcgccagcgggctcgcggccgccgacgaccagatcgggctcgtgctcgaggag
ctcaccgaccggtacggcgaaccgcccgaagccgtcaccaacctcatcgccgtgtccagg
ctgcgcaggcacgcgcaacagtccggcctcggtgaggtcgtcgcgatgggctccaacctg
cgggtggcgccggtcgacctggccgactccatgcaggttcgggtgcagcggatgtacccg
ggtgccaagtattcggccgcggccgggtcgatgatcgtgccgctgccgcgcctgaacggc
gagccgctggccgacgccgcccttatagcgtggacgggctcgctgctggacgcggtgttt
ccgcggcccgtcgatactgccgtgcccgcgcactga
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