Cryobacterium sp. LW097: B7495_14630
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Entry
B7495_14630 CDS
T04908
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cry
Cryobacterium sp. LW097
Pathway
cry03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cry00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B7495_14630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cry03021
]
B7495_14630 (rpoC)
03400 DNA repair and recombination proteins [BR:
cry03400
]
B7495_14630 (rpoC)
Enzymes [BR:
cry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B7495_14630 (rpoC)
Transcription machinery [BR:
cry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B7495_14630 (rpoC)
DNA repair and recombination proteins [BR:
cry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B7495_14630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Not3
ADIP
DUF1690
Motif
Other DBs
NCBI-ProteinID:
ASD23194
UniProt:
A0AAC9X5A2
LinkDB
All DBs
Position
complement(3108842..3112738)
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIEVDEDGRHQDMPGLENELRLEIKTLEGSRDSRIADRLQRLETD
LAALEAEGAKSDQKKRTKDAAEKEMSQVRKALDEQIAHLERVWEDFRTLKVGDLKPEDSV
FHELQDRFGMYFEAFMGAEAIKKRLEAFDLVTESENLHLQIAEGKGQKKIRAIKRLRVVN
AFIMTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSMEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTLKDGVTGEGR
AFTSVSEAILAHDQKSLDLNAKVRIRISDLYFTEGTQPDGVELVDGQAVGTVLVNTTLGR
AIFNEALPADYPYFEKVADKGTLSAIVNDLAERYPKVEVAATLDRIKDAGFYWATRSGVT
VALSDILTPPNKKEIVGTYEKMAAKVQSQFEKGLTTDLERRQELIQIWTKATEDVAAAMQ
ANFPADNTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYF
IATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELPIATVDAAGAL
SRHPNVENAVYARSLAAPAVNAKGEVVADAGDDVGDVMIEKLVAAGVENIKVRSVLTCES
AVGVCAVCYGRSLATGLLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGL
PRVQELFEARTPKGASPIVDVAGRITIEDTDRSRKVILTPDNGDEAIAYPVLKRATLLVE
DGQHVELGTQIIIGAVDPKEVLRVKGVRAVQKHLVGGVQDVYRSQGVPIHDKHIEVIVRQ
MLRKVTVVEHGDTGLLPGELVDRLKYNELNRTALTEGKKTASARQEVMGITKASLATESW
LSAASFQETTRVLTQAAMEGKSDPLMGLKENVIIGKLIPAGTGLPRYRDVNVEATDEAKA
ERYPNRIFTDDAAFTEGDLSFVDFDSFSSDDFTPGTYN
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaacatttgacgagcttcgcattggcctggccaccgctgacgacatc
cgtcgttggtcgcacggtgaggtcaagaagcccgaaaccatcaactaccgcacactcaag
ccggaaaaggacggtctcttcggagagcagatcttcggaccgtcccgcgactgggagtgc
tcgtgcggcaagtacaagcgagtgcgcttcaaaggcatcgtctgtgagcgctgtggcgta
gaggtcacgaagtcgtcggtgcgccgtgagcgcatgggccacatcgaactcgccgccccg
gtcacccacatctggtacttcaagggtgtgccctcgcgtctcggttacctgctggacatg
gctccgaaggacctcgaaaaggtcatctacttcgctgcctacatggtcatcgaggttgac
gaagacggtcgccaccaggacatgcctgggctggagaacgaactgcgtctcgagatcaag
accctcgaaggcagccgcgactcccgcatcgccgaccgcctgcagcgcctcgaaaccgac
ctcgcagcactggaggccgaaggcgccaagagcgaccagaagaagcgcaccaaggacgcc
gccgagaaggagatgtcgcaggttcgcaaggccctcgacgagcagattgctcacctcgag
cgtgtctgggaagacttccgcaccctcaaggtcggcgacctgaagccggaagactccgtc
ttccacgagctccaggaccgcttcggcatgtacttcgaggccttcatgggcgccgaggcc
atcaagaagcgcctcgaggccttcgacctggtcaccgagagcgaaaacctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgtctgcgcgtcgtcaac
gccttcatcatgaccggcaactcgccggccgcgatggtgctcgacgtcgtgccggtcatc
ccgccggaactgcgcccgatggtgcagctcgacggtggccgtttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgcttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgttgacgcg
ctcttcgacaacggtcgtcgtggccgtcccgtcacgggtaccggtaaccgcgccctcaag
tccctgagcgacatgctcaagggtaagcagggtcggttccgtcagaacctgctcggtaag
cgcgttgactactccggccgttcggtcatcattgtcggcccgcagctgaagctgcaccag
tgtggtctgcccaagcagatggctctggagctcttcaagccgttcgtgatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgccaagcgcatggtcgagcgcagccgc
ccccaggtgtgggacgtgctcgaggagatcatccgtgagcgcccggttctgctgaaccgt
gcacccacgctgcaccgcctcggtatccaggccttcgaacctcagctcgtggagggtaag
gccatccagctgcaccccctcgtctgtgcggcgttcaacgccgacttcgacggtgaccag
atggctgtgcacctgccgctgtccatggaggcccaggccgaagcgcgcatcctgatgctc
gcctcgaacaacatcctgaagccgtctgacggtcgcccggtgaccctgcccacccaggac
atgatcatcggtctgcaccacctgaccacgctcaaggacggcgtcaccggcgaaggccgc
gcgttcacctctgtctcggaggccatcctggcgcacgaccagaagtcgctcgacctgaac
gccaaggtgcgcatccgcatcagcgacctgtacttcaccgagggcactcagcccgatggt
gttgagctggtcgatggtcaggccgtcggaaccgtactggtgaacaccacgctgggccgc
gcaatcttcaacgaggcgctgccggctgactacccgtacttcgagaaggttgccgacaag
ggcaccctctcggccatcgtgaacgacctcgccgagcggtacccgaaggtggaagtagcg
gcaacgctggaccgcatcaaggacgccggcttctactgggccacccgctccggtgtgacc
gtcgcgctcagcgacatcctgacgcctccgaacaagaaggagatcgtcggtacctacgag
aagatggccgcgaaggttcagtcgcagttcgagaagggtctcacgaccgacctcgagcgt
cgtcaggagctcatccagatctggaccaaggcgaccgaagacgtcgccgcggccatgcag
gcgaacttcccggccgacaacacgatcaaccggatggttacctctggtgctcgtggtaac
tggctgcaggtgcgaaacatcgccggtatgcgtggtctggttaacaacccgaagggtgag
atcatccctcgcccgattatctcgagctaccgcgaaggcctgtccgtcgccgagtacttc
attgctactcacggtgctcgtaagggtctggccgacaccgctctgcgtaccgcagactcc
gggtacctcacccgtcgtctcgtcgacgtctcgcaggatgtcatcatccgcgaagacgac
tgcggtacgaccaagggtctggaactgccgatcgccacggtcgacgccgccggcgctctc
tcacgtcaccccaacgtggagaacgcggtctacgcccgcagcctggccgcccccgcggtc
aacgccaagggtgaggtcgttgctgacgccggagacgacgtcggtgacgtgatgatcgag
aagctggttgccgccggcgtcgagaacatcaaggtgcgctcggtgctgacctgcgagtct
gctgtcggtgtgtgtgcggtctgctacggccgttcgctcgctaccggcctgctcgtggac
atcggagaggccgtcggcatcatcgccgcacagtcgatcggtgagcccggcacgcagctg
accatgcgtaccttccacaccggtggttccgcatccgcagacgacatcacccagggtctg
ccccgggtgcaggagctcttcgaggcgcgtacccccaagggcgcatcgccgatcgtcgac
gttgctggccgcatcaccatcgaggacacggatcgtagccgcaaggtgatcctgaccccc
gacaacggtgacgaagcaatcgcctacccggtgctcaagcgcgcgaccctcctcgttgag
gatggccagcacgtggagctcggcacgcagatcatcatcggcgccgtcgacccgaaggaa
gttcttcgcgtcaagggtgtccgtgcggtgcagaagcacctcgttggtggcgtgcaggat
gtctaccgttcgcagggcgtgccgattcacgacaagcacatcgaggtcatcgttcgtcag
atgcttcgcaaggtgactgtggtggagcacggcgacaccggcctgctgccgggcgagctc
gttgaccggttgaagtacaacgagctcaaccgcaccgcgctcaccgagggcaagaagacg
gcttcggctcgtcaggaagtcatgggtatcaccaaggcttcgctggctaccgagtcgtgg
ctgtcggccgcttccttccaggagaccacccgggttctgacccaggcggccatggaaggc
aagagcgacccgctgatgggcctgaaggagaacgtgatcatcggtaagttgatcccggcc
ggcaccggtcttccccgttaccgcgacgtcaacgtcgaggcaacggatgaagccaaggct
gagcgttacccgaaccgcatcttcactgatgatgcagcgttcaccgagggtgacctgagc
ttcgtcgacttcgacagcttctcgtcggacgacttcacccccggtacgtacaactaa
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