Chromobacterium rhizoryzae: D1345_10325
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Entry
D1345_10325 CDS
T05688
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
crz
Chromobacterium rhizoryzae
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crz03019
]
D1345_10325 (hrpA)
Enzymes [BR:
crz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D1345_10325 (hrpA)
Messenger RNA biogenesis [BR:
crz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D1345_10325 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
NACHT
AAA_30
AAA_25
ABC_tran
Phage_TAC_17
SLFN-g3_helicase
ResIII
SRP54
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AXT46558
UniProt:
A0AAD0RXH4
LinkDB
All DBs
Position
complement(2292970..2296905)
Genome browser
AA seq
1311 aa
AA seq
DB search
MTAAQLLAQLKADLPSCLIRDRHALRRKLSDAAERLKKNQPADKQLADIQAQIERSAAKV
AARRAHLPKPDFDDALPVNQKLADIKTAIERHQVVIICGETGSGKTTQLPKICLELGRGV
HGLIGHTQPRRLAARSVASRIAQELKSTLGEHVGFKVRFTDKLSEKSVIKLMTDGIMLAE
TQTDRYLEAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIVTSATIDADRFSRHF
DGAPVIEVSGRTYPVEVRYRPLAQRDEDEREVEMEGAIVDAVDELSRQGPGDMLVFLPGE
REIRETAEKLRKAGIRGYEILPLFARLSNEDQQKIFKPSDGRRIVLATNVAETSLTVPGI
KYVIDTGQARINRYSPRAKVEQLQVEKISQAAARQRAGRCGRVEAGICVRLYSEDDFNQR
PAFTDPEIVRSNLAAVILRMAALRLGKVDAFPFLEAPSSRLIADGYQVLTELGAVDDKGE
LTSVGKELARIPVDPKVGRLLLAGRDFGCVREVLIIAAALSVQDPRERPFEAREAAERAQ
ARFNDEKSDFLSFLHLWDFFSDALKHKKSNRLLINTCHEHFLSHLRLREWRELHAQLADI
ASELGLIKREQAHADAEQPDAQMTQKKRQQLDAVAYENLHKALVTGLIGNLGMKNQESDD
YQGTRGVNFHVFPGSGLKKAKPKWLVAAELVETTRLYARCVAKIEPEWVEKLAPHLVKYH
YFDPHWEKSRGEVVASERVTLYGLTLVPRRPVSYGRIAPVEARELFIRGALVNMEYVSNA
PFFQRNQQLIREVEQLEHKARRQDVLVDEEALFAFYSERIPAEVVDATSFEAWRKEAEKT
DAKLLHLTREELMRHAAQHVTENQFPEWLELEDGRLKLRYRFEPNHPLDGVTLDVPLAIL
NRLQPAAFEWLVPGMVREKLQQLIKGLPKQIRRCCVPVPDFVTRFLSGNPDPQQPIAPQL
ARFILRETGGVKVDIDDFRAQELPAHLLFNFRVIDDGKQEIGLGRDLLALQKQFGQAAQL
TFRDTSAEFERDEVSSWDFGELPESIQFARGRQQLTGYPALTLEQDKVAIRLFDTQLVAE
RHHRQGVIRLLQLQLKEQMKQLSKGLPGMTQLGLQLRAVANIDELLADAIACICDRAFIG
DDALPRNEKAFNDQKTRARTRLPAVIQAVTQYLGQVAAEYGPLSVKMQKHKLGYELQQQL
AKLVYKGFLAATPWSQLPHLPRYMRAMGLRMDKQPANPQRDGQRGAEIRDLWQKWETRVA
EDNEAEGASQALLDFRWQIEELRVSLFAQELKTPYPVSAKRLLKLWSELPR
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgcccagctgctggcccaactcaaggccgacctcccctcctgcctgatccgc
gaccgccatgccctgcgtcgcaaactgagcgacgccgccgagcgactgaagaaaaaccag
cctgcggacaagcaactggccgacattcaggctcagatcgaacgctccgccgccaaggtg
gccgcgcgccgcgcccacctgcccaagcccgacttcgacgacgccttgccggtcaaccag
aaactggccgacatcaaaaccgcgatcgagcgccaccaggtggtgatcatctgcggcgaa
accggctccggcaaaaccacccagctgcccaagatctgcctggagctgggccgcggcgtg
cacggtctgatcggccacacccagccgcgtcgtctggccgcgcgttcagtagccagccgc
atcgctcaagagctgaaatccacgctgggcgaacacgtcggcttcaaggtccgcttcacc
gacaagctctcggaaaagtccgtaatcaagctgatgaccgacggcatcatgctggcggaa
acccagaccgaccgctacctggaagcctacgacaccatcatcatcgacgaggcgcacgaa
cgcagcctcaacatcgatttcctgctgggctatctgaaacagctgctgccgcgccggccg
gacctgaaggtgatcgtcacctcggccaccatcgacgccgaccgcttctcccgccatttt
gacggcgcgcccgtgattgaagtctccggccgcacctatccggtggaagtgcgttaccgc
ccgctggcgcagcgcgacgaagacgagcgcgaagtggaaatggaaggcgccatcgtcgac
gccgtcgacgaactgtcgcgccagggcccgggcgatatgctggtcttcctgcctggcgag
cgcgagatccgcgaaaccgcggaaaagctgcgcaaggccggcattcgcggctacgagatc
ctgcccttgttcgcgcggctgtccaacgaggaccagcagaagatattcaagccgtccgac
ggacgccgcatcgtgctggccaccaatgtggccgagacctcgctaacggtgcccggcatc
aaatacgtgatcgacaccggacaggcgcgcatcaaccgctacagcccgcgcgccaaggtg
gaacagctgcaagtggagaaaatttcccaggcggcggcgcgtcagcgcgctggccgttgc
ggccgtgtcgaggccggcatctgcgtgcgcctatacagcgaagacgacttcaatcaacgc
ccggcgttcaccgatcctgaaatcgtccgctccaacctggccgcggtcattctgcgcatg
gccgcgctgcggctgggcaaggtggacgccttccccttcctggaagcgcccagcagccgt
ctgatcgccgacggctaccaagtgctgaccgagctgggcgcggtggacgacaagggggaa
ttgaccagcgtgggcaaagagctggcgcggattccggtggaccctaaggtgggccgcctg
ctgctggccggccgcgacttcggctgcgtgcgcgaagtactgatcattgccgccgccttg
agcgtgcaggacccgcgcgagcggccgttcgaagcgcgcgaggcggccgaacgcgcccag
gcgcgtttcaacgacgagaagtcagacttcctgtccttcctgcacctttgggatttcttc
tccgacgcgctcaagcacaagaaatccaaccgtctgctgatcaacacctgccacgagcac
ttcctgtcccaccttcgcctgcgcgagtggcgcgaactgcacgcgcagctggccgacatc
gccagcgagctgggcctgatcaagcgcgaacaggcccacgccgacgccgaacagccggac
gcgcagatgacgcagaaaaagcgccagcagctagacgccgtcgcctatgaaaacctgcac
aaagcgctggtaaccggcttgatcggcaatctgggcatgaaaaaccaggaaagcgacgac
taccaaggcactcgcggcgttaacttccacgtgtttcccggttccggcctgaaaaaagcc
aagcctaaatggctggtggcggcggaactggtggaaaccacccgcctttacgcccgctgc
gtggccaaaatcgagcctgagtgggtggaaaagctggcgccgcacctggtcaaataccac
tatttcgacccgcactgggaaaagagccgcggcgaagtagtggccagcgagcgcgtcact
ctgtatggcctgaccctggtgccgcgccggccggtgagctatggccgcatcgcgccggta
gaagcgcgcgagctgttcatccgcggcgcgctggtaaacatggaatacgtcagcaacgcg
cccttcttccaacgcaatcagcaactgatccgcgaagtggagcagttggaacacaaggcc
cgccgccaggacgtgctggtggacgaggaagcgctgttcgccttttacagcgaacggatt
ccggccgaggtggtggacgcgaccagcttcgaggcctggcgcaaggaagcggaaaagacc
gacgccaagctcttgcacctgacgcgcgaggagctgatgcgccacgccgcgcaacatgtc
accgaaaaccagtttccggaatggctggagctggaagacggccgcctcaagctgcgttac
cgcttcgaacccaatcacccgctggacggcgtcaccctggacgtgcctctggccatcctc
aaccgcttgcaaccggcggctttcgaatggctggtgcccggcatggtgcgcgaaaagctg
caacagctgatcaagggcctgcccaagcaaatccgccgttgctgcgtgccggtgccggac
ttcgtcacccgtttccttagcggcaacccggacccgcaacagcctatcgcgccgcagctg
gcgcgcttcatcctgcgcgagaccggcggcgtcaaggtggacatcgacgatttccgcgcc
caggagctgccggctcatctgctgttcaacttccgcgtcatcgacgacggcaagcaggaa
attggactgggacgcgatctgctggcgctgcaaaagcagttcggccaggccgcccaactg
actttccgcgatacgagcgcggaattcgagcgcgacgaggtcagcagctgggacttcggc
gaactgccggaaagcatacagtttgcccgcggccgccagcagttgaccggctatccggcc
ttgacgctggaacaagataaggtggcgattcgcctgttcgacactcagctggtagccgag
cgccatcaccgccagggcgtgatccgcctgctgcagctgcagttgaaggaacaaatgaag
cagctgtccaagggcctgcccggcatgacccaactgggcctgcagctgcgcgcagtggcc
aatatcgacgaattattggccgacgccatcgcctgcatctgcgaccgcgctttcattggc
gacgacgcgctgccgcgcaacgagaaagccttcaacgaccagaaaacccgcgcccgcacg
cgcttgccggctgtcattcaggcggtgacccagtacctgggtcaagtggccgcggaatac
ggcccgctcagcgtcaagatgcagaaacacaagctgggttacgagttgcagcagcaattg
gccaagctggtttacaagggtttcctggccgccacgccgtggagccagctgccccatttg
ccgcgctatatgcgcgcgatgggcctgcgcatggacaagcagccggccaacccgcagcgc
gacggccagcgcggcgcggaaatccgcgatctatggcagaaatgggaaacccgggtggca
gaggacaacgaggcggaaggcgcgtcccaggccctgctcgatttccgctggcagatcgaa
gaactacgcgtcagcctgttcgcccaggagttgaaaacgccgtacccggtatccgccaaa
cggctgttgaagctgtggagcgagctgccgcgctaa
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