Chromobacterium rhizoryzae: D1345_14265
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Entry
D1345_14265 CDS
T05688
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
crz
Chromobacterium rhizoryzae
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
crz03009
]
D1345_14265 (rlmD)
Enzymes [BR:
crz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D1345_14265 (rlmD)
Ribosome biogenesis [BR:
crz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D1345_14265 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_15
TRAM
MTS
UPF0020
Methyltransf_11
Methyltransf_12
CMAS
Methyltr_RsmB-F
Cons_hypoth95
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
AXT47284
UniProt:
A0AAD0RT58
LinkDB
All DBs
Position
3154599..3156137
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AA seq
512 aa
AA seq
DB search
MTHKQTIAQVESLDHEGRGVAHVDGKTIFIDGALPYETVVYSAYRKKSSYENANTSQVLK
ESFLRTQPRCPHYGTCGGCSMQHVEFSAQVAVKQRVLEDNLARIGRVKPQQVLTPIAGPA
WHYRHRARMSARLVEKKGGVLVGFHEKRSTYITDMRECHILPRHISDLIVPLREMIYKLS
INNRMPQVELAVGDKVDILVFRNMEAINDADHALLRAFSDAHGSKERPLQMWLQPKGPDT
CYPVYPLDAPKLTYSLPEYRVEMPYYPTEFTQVNPEINAVMVARALKFLDPQPGERIADM
FCGIGNFTLPIARSGAEVHGMEGSQPLVKRAVENATHNGLQDKVSYEMANLFEVTEESFA
ALGKFDKMLVDPPRDGAVQLLKAITEDTAPKRIVYVSCNPATLARDANVLVHTKGYTLKA
AGIINMFPHTAHVESVAWFEKTGPCKSRSEIAVIEAAEEAEREAVKAAQRAEAAAEAAKK
ERELAEKAAAKQARRDYYFAEQARREAEQQAQ
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacaaacagactatcgctcaggtcgaatcgctggaccacgaaggccggggagtc
gcccacgtcgacggcaagaccatcttcatcgatggcgcgctaccgtatgaaaccgtggtc
tacagcgcctatcgcaagaagtcttcctacgaaaacgccaacaccagccaggtgctgaag
gaaagcttcctgcgcacgcagccgcgctgtccgcattacggcacctgcggcggctgttcg
atgcagcatgtggagttcagcgcccaagtggcggtcaagcaaagggtgctggaagacaat
ctggcccgcatcggccgggtcaagccgcaacaggtgctgacccccatcgccggcccggcc
tggcactatcgccaccgcgcgcggatgtcggcgcggctggtggagaagaagggcggcgtg
ctggtgggtttccacgagaagcgctccacctacattaccgatatgcgcgagtgccacatc
ctgccgcgccacatctctgacctgatcgtgccgctgcgcgagatgatctataaactgtcg
atcaacaaccgcatgccccaggtggagctggcggtgggcgacaaggtggacatcctggtg
ttccgcaatatggaagccatcaacgacgccgaccacgccttgttgcgcgccttctccgac
gcccacggcagcaaggagcggccgctgcaaatgtggttgcagcccaaggggccggacacc
tgttatccggtctacccgctggacgcgcccaagctgacttacagcctgccggaataccgc
gtggaaatgccctactaccccaccgagttcacccaggtgaaccccgaaatcaatgcggtg
atggtggcgcgcgcgctgaaattcctggacccgcagccgggcgagcgcatcgccgacatg
ttctgcggcatcggcaacttcaccctgcccatcgcccgctccggcgccgaggtgcacggc
atggaaggcagccagcctctggtcaagcgcgcggtggaaaacgccacccacaacggcctg
caggacaaggtcagctatgaaatggccaatttgttcgaagtcaccgaggaatccttcgcc
gcgctcggcaagttcgacaagatgctggtggacccgccgcgcgacggcgcggtgcagttg
ctgaaagccatcaccgaggacaccgcgcccaagcgcatcgtctacgtgtcctgtaacccg
gccacgctggcgcgcgacgccaatgtgctggtgcataccaagggctacacgctgaaggcg
gccggcatcatcaatatgttccctcacaccgcccatgtggaatctgtggcctggttcgaa
aagaccggcccgtgcaagagccgcagcgaaatcgccgtgatcgaagccgccgaggaagcc
gagcgcgaagcggtgaaggccgcccagcgcgcggaggcggcggcggaagccgccaagaaa
gagcgggaactggcggaaaaggccgcggccaagcaagcgcgccgcgattattatttcgcc
gagcaagcgcgccgcgaagcggaacagcaagcgcagtag
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