Chromobacterium rhizoryzae: D1345_16120
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Entry
D1345_16120 CDS
T05688
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
crz
Chromobacterium rhizoryzae
Pathway
crz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1345_16120 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crz03019
]
D1345_16120 (rnr)
03016 Transfer RNA biogenesis [BR:
crz03016
]
D1345_16120 (rnr)
Enzymes [BR:
crz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D1345_16120 (rnr)
Messenger RNA biogenesis [BR:
crz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1345_16120 (rnr)
Transfer RNA biogenesis [BR:
crz03016
]
Prokaryotic type
tRNA degradation factors
D1345_16120 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HC2
Extensin_1
RNase_II_C_S1
OB_Dis3
WHD_RNase_R
ASFV_J13L
DUF1918
Motif
Other DBs
NCBI-ProteinID:
AXT49170
UniProt:
A0AAD0RWT5
LinkDB
All DBs
Position
complement(3547340..3550063)
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AA seq
907 aa
AA seq
DB search
MARTQKKQKTLSLREQDPFLEREKLKYSNPLPSREFVLKILAEQGVPLFPDELARMLSIT
RAESIYFERRLRAMERDGEVIINRKGAVCVAQKLDLIKCKVSGHRDGYGFAIPDESEGQG
GDIFLPEREMKKAMHGDRVMVRPSGLDRRGRQEGKIVEVLDHVVTRLVGRINRVRGVWVV
TAEDRRINHDILIEPGGEAGAKDGQVVMVEILQYPDAYRQPVGQVVEVLGNYADPGMEIE
IALRKHDLPHQFPETALAQAKATPKKVRKKDWTKDRVDLRDLPLVTIDGETARDFDDAVY
AEKQGKGFRLIVAIADVSFYVEPGDALDQEALNRGTSVYFPRRVIPMLPEALSNGICSLN
PDVERMCMVCDMQINAKGVVKRYQFYPAVMLSKARLTYNQVWEWIQKGSDSPVLPQIQTL
YSLFKVLLAARSQRGAIEFDSVETQMIFNDAGKIERIVPVVRNDAHRLIEECMLAANVCA
ADFLEKNGHKALYRVHEGPTEEKLENLRNYLRLVGLSLGGGEKPTAKDYAKLAEQIHGRP
DAPVLQTMLLRSMQQAVYTPDNNGHFGLAYEAYAHFTSPIRRYPDLLVHRSIKAVLKGGK
YKPGKWAQLGVHCSMTERRADDASRDVESWLKTYYMRDKVGEIFKGKICAVTSFGVFVLL
DDVYVEGLVHISELGKDYFHFKKDVQAIVGEKSGMQYRLGDTLTVKVMSANLESAQVDFA
LVKEGDLQIPRPVPARSVGARPAGPRRGSESKPVEAKPSALPAAPKGRSRGAVQSPVPKP
VVNQPVARKPVARKPVASKPATSKPATSKPATSKPATSSAAKPVENKPVSNLTAPKVAGA
TPATAKPVVKRSVVSKSVPAESMPAVEAPADKSGAIERKPAVEGASPAPRQRKPSVRRSS
SKRRSED
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggctagaacacaaaaaaaacaaaagaccctgtccctccgcgaacaggaccccttcctg
gaacgggaaaaacttaaatattccaatcccttgccgagccgagagttcgttttaaagatt
ttggccgagcagggggtgccgctatttcctgatgaattggcgcgcatgttgtcgattacg
cgagctgaatctatttatttcgaacgccgcttgcgggcaatggagcgagacggcgaagtc
atcatcaatcgcaaaggcgcagtctgcgtcgctcaaaagctggacttgatcaagtgcaaa
gtgtccggtcaccgcgatggctacggttttgccatcccggatgaaagtgaaggccagggc
ggagatattttcctgcccgagcgggaaatgaaaaaagcgatgcatggcgatcgggtgatg
gtccgcccgtccggccttgatcgcagaggccggcaggaaggcaagatcgtagaggtgttg
gatcatgtggtgacgcggttggtcggccgcatcaaccgtgtccggggcgtgtgggtggtg
acggcggaagaccgccgcatcaaccacgacattctgattgagccgggtggagaggcgggt
gccaaggacggccaggtagtcatggtggaaatccttcaatatccggatgcctaccgtcag
cctgttggccaagtagtggaagtgttgggtaattacgccgatcccggaatggaaatcgag
atcgcgctgcgtaagcacgatctgcctcatcaattccctgagacagcgttggcgcaagca
aaggcgacaccgaaaaaggtgcgtaagaaagattggaccaaggatcgagtcgacctgcgt
gatctgcccttggtgacgatagacggtgaaaccgcgcgcgacttcgatgatgccgtgtat
gcggagaagcagggcaagggcttccgtctgatcgtggcgattgccgacgtcagcttttac
gtagagcccggcgacgctttggatcaggaagcgcttaaccgcggcacttcggtctatttt
ccgcgccgcgtcattccgatgctgccggaagccctgtccaacgggatctgctcgctgaat
ccggatgtggagcggatgtgtatggtctgcgatatgcagatcaacgccaagggcgtggtc
aagcgctatcagttctatccggcggtgatgctgtccaaggcgaggttgacctacaaccag
gtttgggagtggattcagaagggaagcgacagtccggtgttgccgcagatccagaccttg
tactcgttgttcaaggtgttgcttgcggcgcgcagtcagcgcggggcgatcgagttcgac
tcggtggaaactcagatgatcttcaacgacgcgggcaagatcgaacgcatcgtgcccgtt
gtgcgcaacgacgctcaccgcctgattgaagagtgcatgctggcggccaacgtttgtgcc
gctgatttcctggagaagaacgggcacaaagccttgtatcgggtgcatgaggggccgact
gaagagaagctggagaatctgcgcaactatctgcgcctggtcggcttgagtttgggcggc
ggtgaaaaacccaccgctaaagactatgccaaattggccgaacagattcatgggcggccc
gacgcgccggtgctgcagaccatgttgctgcgctccatgcagcaagctgtttataccccg
gacaataacggccactttggtctggcttacgaggcctacgctcatttcacttctccgatt
cgccgctacccggacctgttggtgcatcgctcgatcaaggctgtgcttaaaggcggtaaa
tacaagcctggcaagtgggcgcaactgggcgtgcattgttcaatgaccgaacgccgggcg
gacgatgccagccgtgatgtggagtcctggctgaaaacctactatatgcgagacaaggtg
ggtgagatcttcaagggcaagatctgtgcggtgaccagctttggcgtattcgtgttgttg
gatgatgtgtatgtcgagggtttggtgcatatctcggagttgggcaaggactacttccac
ttcaagaaggacgtgcaggcgattgtcggggagaaaagcggcatgcaataccgcttgggc
gatactctgactgtgaaggtgatgagcgctaatctggagagtgctcaagtcgacttcgct
ctggtcaaagagggtgacttgcagatcccgagaccggttcccgcgcgtagtgttggggcg
cgcccagctggtccgcgtaggggctccgagtccaagcccgtggaagcgaagccctctgca
ttgccggctgcgcccaaggggcgaagccggggggctgtccaatcgccggtgcctaagcca
gtggtgaatcagcccgtagcgagaaagccagtagcgagaaagccagtagcgagcaagcca
gcaacgagcaagccagcaacgagcaagccagcaacgagcaagccagcaacgagctccgcg
gccaagcctgttgaaaataagcccgtgtcgaacctgactgctccgaaagtcgcaggggca
acgcccgcgacagccaaacccgttgttaagcggtccgtggtatccaagtcggtgcctgcg
gagtcgatgccggcggttgaggctcctgcggataagtctggtgctattgagcgcaagcct
gcggttgagggggcttcgcctgcgccgcgccaacgcaagccgtcagtgcgtcggagcagc
agtaagcgccgtagcgaggactga
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