Chromobacterium rhizoryzae: D1345_19410
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Entry
D1345_19410 CDS
T05688
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
crz
Chromobacterium rhizoryzae
Pathway
crz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
crz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D1345_19410 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
crz03400
]
D1345_19410 (recD)
Enzymes [BR:
crz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D1345_19410 (recD)
DNA repair and recombination proteins [BR:
crz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D1345_19410 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
AAA_22
RecD_N
UvrD-helicase
SLFN-g3_helicase
AAA_24
AAA_25
T2SSE
AAA_16
nSTAND3
CbiA
UvrD_C
AAA_28
SRP54
NTPase_1
TrwB_AAD_bind
Mg_chelatase
ATPase
Rad17
AAA
V-SNARE_C
Motif
Other DBs
NCBI-ProteinID:
AXT48197
UniProt:
A0AAD0RT70
LinkDB
All DBs
Position
complement(4247023..4248720)
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AA seq
565 aa
AA seq
DB search
MSVQQALLPAELAHLFARLDPGVDEAALALIHELASANQAGHVCLPLAQRPECKALQASA
LVGRPGDYAPLILDAAGRLYFARHWFDEARLAERLAALAEPGPALDGARLRPLLEALFGS
ASATGPDRQKLAAAMAARQRLMVISGGPGTGKTTTVLKLLALLAGLSPRPLVMAMAAPTG
KAAARLSESVRGARERLDLAEETLRQLPQQAQTLHRLLGLRPGAAAPRHHASNPLPLDVL
VVDEASMIDLSLMARMVEALPSQARLILLGDRDQLASVDAGAVLGDLCANIHYRPDTLEW
LRVNCGETLPPTPGAGGKLTDCVALLTHSHRFGADSGIGELARRVNAGDGAGSWAVLQDP
AWRDVEAVPTLDAAEVLERWRPYWRAVRAGEPLAERQRAFAGFMLLAAERRQVEAFNLRI
ERQLEADGDKPAGRDWYPGRPVMISENDYGLGLFNGDIGFTVQGEAGLRVAFPGDDGGWR
EFAPGRLPQHDTVYAMTVHKSQGSEFGEVCLQLPEAAGPLLNRALVYTAITRARERFVVS
GAQLVWEQAAEAAPQRYSGLADKLK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtccagcaagccctgttgcccgccgaactggcgcacttgttcgcccgcctcgat
cccggcgtggacgaggccgcgttggcgctgattcatgaactggccagcgccaatcaggcc
ggccatgtctgcctgccgctggcgcagcgtccggagtgcaaagccttgcaggccagcgcg
ctggttggccgccccggcgattacgctcccttgattctggacgcggccggccgcttgtat
tttgcccgtcactggttcgacgaagcacgacttgccgagcgcctggccgccctggccgag
ccggggccggcgctggacggcgcgcgcttgcgtccgctgctggaggccttgttcggttcg
gcatccgcgacggggccggaccggcagaagctggcggcggctatggcggcgcgccagcgg
ttgatggtcatttccggcggtccgggcaccggcaagaccaccaccgtgctcaagttgctg
gccttgctggccggactgtcgccgcggccgctggtcatggcgatggcagcgcccaccggc
aaggccgccgcgcggctgtcggaatcggtccgcggcgcgcgcgagcggcttgacttggcc
gaggaaacactgcggcaattgccgcagcaggcgcagactctgcaccgcctgctgggcttg
cgtccgggcgcggcggcgccgcgccaccacgcaagcaaccctttgccgctggacgtgctg
gtggtggacgaggcgtcgatgatagatctgtccttgatggcgcgcatggtggaggccctg
ccgtcccaagcgcggctgattctgctgggcgatcgcgatcagttggcctcggtggacgcc
ggcgcggtgctgggtgatctgtgcgccaacatccattaccggccggacacgctggagtgg
ctgcgggtgaactgcggcgaaactttgccgcccacgccgggcgcgggaggcaaactcacc
gattgcgtggcgctgctcactcacagccatcgtttcggcgccgactccggcattggcgaa
ctggcgagaagggtgaacgccggcgatggcgccggcagttgggcggtgttgcaagatccg
gcttggcgcgatgtggaggcggtgccgacgctggacgcggcggaagtgctggagcgctgg
cggccgtattggcgggcggtgcgcgccggcgagcccctggccgagcgccagcgagccttc
gccggtttcatgttgctggcggcggagcggcggcaggtagaggccttcaatctgcgcatt
gagagacaactggaagccgatggggacaagccggccggccgagactggtatccggggcgt
ccggtgatgatcagcgagaacgattacggcctgggcctgttcaacggcgacatcggcttc
acggtgcaaggcgaggccggtttgagggtggcttttcccggagacgacggcggctggcgc
gagttcgctcccggccgcctgccgcagcacgataccgtgtacgcgatgacggtgcacaag
agccaggggtccgagttcggcgaagtctgtttgcagctgccggaggcggcggggccgctg
ctaaaccgggcgctggtgtataccgcgatcacccgggcgcgggagcgcttcgtcgtgtcc
ggcgcgcagctggtgtgggaacaggcggcagaggcggcgccgcaacgttactccgggctg
gccgacaaactgaaatga
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