Chromohalobacter israelensis: Csal_0415
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Entry
Csal_0415 CDS
T00347
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
csa
Chromohalobacter israelensis
Pathway
csa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Csal_0415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csa03021
]
Csal_0415
03400 DNA repair and recombination proteins [BR:
csa03400
]
Csal_0415
Enzymes [BR:
csa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Csal_0415
Transcription machinery [BR:
csa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Csal_0415
DNA repair and recombination proteins [BR:
csa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Csal_0415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DUF3150
Motif
Other DBs
NCBI-ProteinID:
ABE57777
UniProt:
Q1R0I1
LinkDB
All DBs
Position
470513..474730
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELAAPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFMVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQALLNDVDLDEEIERLREEIPQTNSETKIKKLSKRLKLLEAFQKSGNDPAWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQAGGQASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLES
RTLMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAPGEGMVFSNLDEVERAFGTQ
SVSLHARVKVRLTEYDRDEDGGEWTSSTKIHDTTVGRALLYRILPKGMPFELVDQPMKKK
AISGLINAVYRRSGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDSKKEIVDGAEE
EVKEIENQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMAGISKETAIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVSQDLVITEEDCGTEDGLTLHPVIEGGDVIVSLAQRV
LGRVVAQDVVDPATDDVLIARGTLLDEAWCARLDTMGVDEIVVRSAITCETAHGVCSACY
GRDLARGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGTVR
LHNIKHVERSDGKLVVVSRSSALAVADEHGREREYYKLPYGAELSVRDGDMVEAGTPVAK
WDPHTHPVVAEVEGKVQFSDMEEGLTIHRSVDEMTGLSNIEVIESASRPASGRDKRPMIM
LLDENGGHVTLPGSNTPVQYMLPGKAIISVENGGQVGVGEVIARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEVTGTISFGKETKGKRRLTITPEEGDPLEMLIPKWRQIGVFE
GETVEKGEVISDGPSNPHDILRLLGVAELAKYITAEIQDVYRLQGVVIDDKHIEVIVRQM
LRKVEITDSGDSSFITGDQVEFVRVLEENQRLAQEDKFPAKYDRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLVPAGTGLAHHAERRRRREDPESTA
NPSAFDVEQELGAQLTALDAEDDDL
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcaggcacagtccgaagaattcgacgcgatc
aagatcacgctcgcgtcgccggacatgattcgctcgtggtcttacggcgaagtcaagaag
cctgagaccatcaactaccgtacgttcaagcccgagcgtgatggcctgttctgcgccaag
atcttcggtccggtcaaggattacgagtgcttgtgcggtaagtacaagcgcatgaagcat
cgtggcatcatctgcgagaagtgcggcgtcgaagtgaccaaggccgccgtgcgtcgcgag
cgcatggggcacatcgagctggccgccccggtcgcgcatatctggttcctgaaatcgctg
ccgtcgcgcatcggcatgttcctcgacatgaccctgcgtgacatcgagcgtgtgctgtat
ttcgaaagcttcatggtcatcgatccgggcatgaccacgctggagcgcggccagctgctc
aacgacgagcagtatttcgaagccctcgaagagttcggcgacgacttcgatgcccgcatg
ggtgccgaggcggttcaggcgctgctcaacgacgttgatctcgacgaggaaatcgagcgc
ctgcgtgaagagattccgcagaccaactccgaaaccaagatcaagaagctttccaagcgc
ctgaagctgctggaggccttccagaagtccggaaacgatccggcctggatgatcatggag
gtgctgccggtactgccgccggacctgcgtccgctggtgccgttggatggcggtcgtttc
gcgacctcggatctcaacgatctgtaccgtcgcgtcatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtcgacgcattgctcgacaacggtcgccgtggtcgtgccatcaccggttccaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggcaagcagggtcgcttccgtcag
aacctgctgggcaagcgtgtcgactattccggccgctcggtcatcaccgtcggtccgacg
ctgcgtctgcatcagtgcggtctgcccaagaagatggcgctggagctgttcaagccgttc
atctactccaagctgcaggcgggcggtcaggcgtccaccatcaaggcggccaagaagatg
gtcgagcgcgaactgccggaagtgtgggacatcctcgccgatgtcatccgcgagcatccg
gtgctgctcaaccgcgcgccgacgctgcaccgtctgggcatccaggcgttcgagccgctg
ttgatcgaaggcaaggcgattcagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggcgaccagatggccgttcacgtgccgttgacgctggaagcccagctcgagtcg
cgcaccctgatgatggccaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtggtgctggggctgtactacatgacgcgcgagaagatcggggcg
ccgggcgaaggcatggtgttctccaacctcgacgaagtcgagcgtgcgttcggtacccag
tcggtgtcgctgcatgcacgggtgaaagtgcgtctgaccgagtacgatcgcgacgaagac
ggtggggagtggacctcgagcaccaagatccatgacaccacggtcgggcgtgccttgctg
taccgcattctgcccaagggcatgccgttcgagctggtcgaccagccgatgaagaagaag
gcgatctccgggctgatcaacgccgtgtatcgccgttccggtctcaaggacacggtgatc
ttcgccgaccagttgatgtataccggcttccgcctggcgacctggtccggcgcttcgatc
ggtgtcaacgacttcgtcatccccgactcgaagaaggaaatcgtcgacggggccgaagag
gaagtgaaggaaatcgagaaccagttctcctcgggcctcgtgacggccggcgagaagtac
aacaaggtcatcgatatctggtccaaggccaacgacaaggtggccaaggcgatgatggcg
ggcatttccaaggaaaccgccatcgatcgcgaaggcaacgaagtcgagcaggactcgttc
aacagcgtcttcatcatggcggactccggggcgcgtggtagcgctgcccagatccgtcag
ctggcgggcatgcgcggtctgatggccaagccggacggctcgatcatcgagaccccgatc
accgccaacttccgtgaaggcctgaacgtactgcagtacttcatctcgacccacggcgct
cgtaagggcctcgcggatacggcgctgaaaaccgccaactccggttacctgacacgtcgt
ctggtcgatgtctcgcaggacctggtcatcaccgaagaagactgcggcaccgaagacggt
ctgacgctgcatccggtgatcgagggcggtgatgtcatcgtctcgctggcacagcgcgtg
ctgggtcgcgtcgtggcccaggatgtcgtcgatccggcgaccgacgacgtgttgatcgcg
cgtggcacgctgctcgatgaagcctggtgtgcgcgtctcgacaccatgggcgtggacgag
atcgtcgtgcgcagcgccatcacctgcgaaaccgcgcatggcgtctgctcggcgtgctac
gggcgcgatctggcgcgtggccaccaggtcaacgtcggtgaggccgtgggcgtcatcgcc
gcgcagtccatcggcgagccgggcacccagctcaccatgcgcacgttccacatcggtggt
gcggcatcgcgtgcctcggcggtggatagcgtgcaggtcaagcatggcggcacggtgcgt
ctgcacaacatcaagcacgtcgagcgcagcgacggcaaactcgtcgtcgtctctcgctcc
agcgccctggccgtcgccgacgagcatggtcgcgagcgcgagtactacaagctgccgtac
ggtgccgagctgtcggtgcgtgacggtgacatggtcgaagcgggaacgccggtcgccaag
tgggatccgcacactcatccggtcgtcgccgaggtcgagggcaaggtccagttcagcgat
atggaggaaggtctgaccatccaccgtagcgtggacgagatgaccggcctgtcgaacatc
gaggtgatcgaaagcgccagccgtcccgcctccgggcgtgacaagcgccccatgatcatg
ctgctcgacgaaaacggcgggcatgtcacgttgccgggctccaacacgccggttcagtac
atgctgccgggcaaggcgatcatctcggtcgagaacggcggccaggtgggcgttggcgaa
gtcatcgcgcgcatcccggtggaagcgtccggcaacaaggacatcaccgggggtctcccg
cgtgtcgcggatctgttcgaggcgcgcaagcccaaggaaccggccatcctcgccgaggtc
acaggtaccatcagcttcggcaaggaaaccaagggcaagcgtcgtctgacgatcaccccg
gaagagggcgatccgctcgagatgctgatccccaaatggcgtcagatcggggtgttcgag
ggcgagaccgtcgagaagggcgaggtcatctccgatggtcccagcaacccgcacgacatc
ctgcgtctgctgggcgtggccgagctggccaagtacatcaccgccgagattcaggacgtc
tatcgtctgcagggcgtggtgatcgatgacaagcacatcgaggtcatcgtgcgccagatg
ctgcgcaaggtagaaatcaccgattccggggattcttccttcatcacgggtgatcaggtg
gagttcgtccgcgtgctcgaggagaaccagcgcctggctcaggaagacaagtttccggcc
aagtacgaccggctgctgctgggtatcaccaaggcaagcctggccaccgagtcgttcatc
tccgcggcttcgttccaggagaccacgcgcgtgctcaccgaggccgccgtcaccggcaag
cgcgattatctgcgcggtctcaaggagaacgtcgtggtgggtcgcctggtgccggccggc
acgggcctggcccaccatgccgaacgccgccgccggcgcgaggatcccgagagcacggcc
aacccgtcggccttcgacgtcgaacaggagctgggtgcccagcttaccgcgttggatgcc
gaggacgacgacctctag
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