Chromohalobacter israelensis: Csal_0584
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Entry
Csal_0584 CDS
T00347
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
csa
Chromohalobacter israelensis
Pathway
csa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Csal_0584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csa03021
]
Csal_0584
03019 Messenger RNA biogenesis [BR:
csa03019
]
Csal_0584
Transcription machinery [BR:
csa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Csal_0584
Messenger RNA biogenesis [BR:
csa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Csal_0584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
NACHT
S1CSD-TOTE-2
Fungal_virus_P2_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABE57946
UniProt:
Q1R012
LinkDB
All DBs
Position
648610..649869
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLDIAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSIAGKIRPPKEGERYFALLKVNEIN
FDRPENAKHKILFENLTPLFPQERMVMEIGNGSTEDLTSRVIDLTSPIGKGQRGLIVSPP
KAGKTLMLQNIATSITRNNPECHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKRDVVVLLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAEKRVYPALNI
RRSGTRREDLIASEEEMQRMWILRKLLNPMDDVAATEFLIDRLKDTKTNIEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaactcaagcaaaaaaccgttcccgaactgctggatattgcccgggaa
atgggcatcgacaatctggcgcgttcgcgtaaacaagacatcatctttgccattctcaag
aagcacgcgaaaagtggcgaagatatctatggcgatggggtgctggaaatcctgcaggac
ggcttcggctttctgcgcagtgccgatagctcctatctggccggccccgacgatatctat
gtctcgccgtcgcagattcgccgtttcaacctgcgcaagggcgacagcatcgccggcaag
atccggccgccgaaggaaggggagcgctatttcgcgctgctcaaggtcaacgagatcaac
ttcgatcggccggaaaacgccaagcacaagatcctgttcgagaacctgacgccgctgttc
cctcaggaacgcatggtgatggagatcggcaacggttcgaccgaggatctgacctcgcgg
gtgatcgacctcacatcgcccatcggcaagggccagcgtggcctgatcgtctcgcccccc
aaggcgggcaagacgctgatgctgcagaacatcgccacgtccatcacgcgcaacaacccc
gagtgtcacctgatcgtgctgctgatcgacgagcggcccgaggaggtcaccgagatgtcg
cgcaccgtgcgtggcgaagtggtggcctcgaccttcgacgagccgcccgcgcgtcacgtt
caggtcgccgagatggtcatcgagaaagccaagcgcctggtcgagcacaagcgcgacgtg
gtggtgctgctcgattccatcacgcgcctggcgcgcgcctacaacaccgtggtgccgtcg
tccggcaaggtgctgaccggcggtgtcgacgcgcatgcgctcgagaagcccaagcgtttc
ttcggggccgcgcgcaacatcgaggaaggcggcagcctgaccatcatcgccacggcgctg
gtggacaccggttccaagatggacgaggtcatcttcgaggagttcaaggggaccggcaac
atggaagcgcacctcgaccgcaagctggccgagaagcgcgtctatccggcgctcaacatc
cgccgctccggcacgcgtcgcgaggacctcatcgcctccgaggaagaaatgcagcgcatg
tggatcctgcgcaagctgctcaatccgatggacgacgtggcggcgacggagtttctgatc
gatcgtctgaaggataccaagacgaatatcgaattcttcgaggccatgaaaaggcgttga
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