Chromohalobacter israelensis: Csal_0976
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Entry
Csal_0976 CDS
T00347
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
csa
Chromohalobacter israelensis
Pathway
csa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Csal_0976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csa03021
]
Csal_0976
Transcription machinery [BR:
csa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Csal_0976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ABE58333
UniProt:
Q1QYX5
LinkDB
All DBs
Position
1093279..1095123
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AA seq
614 aa
AA seq
DB search
MAGNTQQSRLKELIAQGKEQGFLTYAEVNDHLPEDIADPDQVEDIIAMINDMGISVVEEA
PDEDTLMMSDQSADESAAEEAVAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEEGTREVMSSLAYLPGAVDSILSAYDATQDEEAPGRLSDLFSGFIDPDEGIPGVAE
AEVPEPEPEPSAADGDVSEDDDEAEEEETGGGPDPEEARARFEQIREQNERAKAAIEEHG
LGSKEASAEQARLAELFSPIKLVPKHFERLVGQVRISVEQIRGQEKAIMQIFVKQAKVPR
KTFIGSFPGAESDLEWLDRFMAKHTKFADRLEPFRADIQRAQRKIGFEEEMVLLPVSHIK
EVNRRLSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPT
PEELGERLEMPEDKVRKVLKIAKEPISMETPIGDDDDSHLGDFIEDGTMLLPIDSATGEG
LIEATRNVLGGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEPLRTFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaatacgcagcagtcacgtctgaaggagttgatcgcccagggtaaggaacag
ggcttcctgacctatgcggaggtcaacgaccaccttcccgaggatatcgccgatcccgat
caggtggaagacatcatcgcgatgatcaacgacatgggtatcagcgtcgtcgaggaagcg
cctgacgaagataccctgatgatgtccgatcaatccgccgacgaatcggcggcggaagaa
gccgtcgccgcgctggccgcggtggaaagcgatgtcggccgcaccaccgatcccgtgcgc
atgtacatgcgcgagatgggtacggtggaattgttgacgcgcgagggcgagatcgaaatc
gccaagcgtatcgaggaaggcacccgtgaggtgatgtcgtcgctggcctatttgcctggc
gccgtggactccattctcagcgcttacgatgccacccaggatgaagaagcgccgggccgg
ctgtccgacctgttttccggcttcatcgaccccgacgaagggattcccggcgtggccgag
gcggaggtgcccgagcccgagcccgagccgagcgccgcggacggcgatgtctccgaggac
gatgacgaggccgaggaagaggaaaccggtggtggtccggaccccgaagaagcgcgggca
cgcttcgagcagatccgtgagcagaacgagcgcgccaaggccgcgatcgaagagcacggg
ctcggctcgaaggaagccagcgccgagcaggcccgtctggccgagctgttctcgccgatc
aagctggtgcccaagcatttcgagcgtctggtgggccaggtgcggatcagcgtcgagcag
atccgcggccaggaaaaggccatcatgcagatcttcgtgaagcaggccaaggtgccgcgc
aagaccttcatcgggtcgtttccgggcgccgagtccgacctcgagtggctggaccggttc
atggccaagcacaccaagttcgccgatcgtctcgagccgttccgcgccgacatccagcgt
gcccagcgcaagatcggcttcgaggaagagatggtcctgctgccggtctcgcacatcaag
gaagtcaatcgccgcctgtcgatcggcgaggccaaggcgcgtcgcgccaagaaggaaatg
gtcgaggccaacctgcgtctggtcatctcgatcgccaagaagtacaccaaccgtggcctg
cagttcctggacctcatccaggaaggcaacatcggcctgatgaaggcggtggacaagttc
gagtatcgtcgtggctacaagttctcgacctatgccacctggtggattcgtcaggcgatc
acgcggtcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatcgagacc
atcaacaagctcaaccgcgtgtcgcggcagatgctgcaggagatggggcgcgagccgaca
ccggaagaattgggcgagcgtctcgagatgcccgaggacaaggtgcgcaaggtgctcaag
atcgccaaggaaccgatctccatggagactccgatcggcgacgacgacgactcgcatctc
ggcgatttcatcgaggatggcacgatgctgttgccgatcgactccgcgaccggcgaaggc
ttgatcgaggcgacccgcaacgtgctgggcggtctgaccgcgcgcgaggccaaggtgctg
cgcatgcgcttcggcatcgacatgaacaccgaccacacgctggaagaggtcggcaagcag
ttcgatgtcacccgcgagcgtatccgtcagatcgaggccaaggcactgcgcaagttgcgt
cacccctcacgctccgagccgctgcgcaccttcctcgacgagtaa
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