Chromohalobacter israelensis: Csal_1567
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Entry
Csal_1567 CDS
T00347
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
csa
Chromohalobacter israelensis
Pathway
csa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Csal_1567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csa03400
]
Csal_1567
Enzymes [BR:
csa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Csal_1567
DNA repair and recombination proteins [BR:
csa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Csal_1567
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABE58920
UniProt:
Q1QX88
LinkDB
All DBs
Position
complement(1783267..1786719)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSYFSPLDPPSPRGLRDTLYWQRPHAAASALSLARLADDAPLMVVAPNTASAQRLESALQ
FFADHPILSFPDWETLPYDSFSPHQDIVSTRLKTLRQLQEGTRGIVVVPINTLMQRLSPT
DYIAGRVLTLRTGMQLDREGFRDRLSRAGYRAVETVYEPGEHALRGALIDLYPMGSDHPL
RIDLFDDEIDTLRHFDPDTQRSLDKIERIELLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYNDALKGIPSPGLEQYLPLFFEETATLFEHLADNTRIALLPGVHDAAEHHWSAIES
RYDNLGVDPTRPLLPPAHAFVPVAEVFAAIKRHPRVAIVEEDEQQPHAVVPTTQPPPDVA
INARAHRPLAKLESFLAAHDDLRILLVAESSGRREALEETLAPLGRPLAVAEGWQHFVDG
SAPLAICEGSLDEGLWLEDASTCVITETELYGDVVRQARRRGRATDDNELAVRHLAELRP
GAPVVHQSHGVGRYQGLETLEAGGQAAEFLALEYAGGAKLYVPVDSLHLISRYAGATDEL
APLHKLGSETWDKAKRKAAEKIRDTAAELLDTYARREAREGFACAPPDEDYARFAASFPF
EETPDQHAAIEAVIGDMTAARPMDRVVCGDVGFGKTEVAMRAAFLAVESGRQVVVLVPTT
LLAQQHYDNFRDRFADTAVQIELISRFTAGKGQQASLERITEGRADIVIGTHKLLSKSMS
LPNMGLLIIDEEHRFGVSQKEKLKGLRAEIDILTLTATPIPRTLNMAMSGIRDLSIIATP
PARRLSVKTFVQQRNEGVLKEALLREILRGGQVYFLHNEVKTIDATAAKITELVPDARVG
IAHGQLPERELERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPPKAMTRDALKRLEAIGQAEDLGAGFTLASHDMEIRGAGELL
GDEQSGQMETIGYSLYMQMLDRAVKAIKSGRTPNIEAPLDEGVEVSLNLPALIPDDYLPD
VQQRLIMYKRIANAESEGELKELQVEMIDRFGLLPAPLKTLFRQTRLRQRAERLGITRLE
AGAERGRMTFGTQTAVDPMTLVEMIQRDPAHYRLDGADTLRFEGEMADEESRFALLEALL
ERLNQKAKAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatttttcaccgctcgatcctccgtccccacggggcctgcgcgatacgctttat
tggcagcgtccgcatgccgccgccagcgccttgtcactggcgcgcctggccgatgacgcc
cccttgatggtcgtggcacccaacaccgccagcgcgcaacgcctcgaaagcgccctgcag
ttcttcgccgatcatcccatcctgtcgttccccgactgggaaacgctgccctacgacagc
ttttcgccgcaccaggacatcgtgtcgacgcgcctgaagacgctgcgccagttgcaggaa
ggcacccgaggcatcgtcgtggtgcccatcaacaccctgatgcagcgcctgtcgcccacc
gactatatcgccggtcgcgtgctgacgctgcgcaccggcatgcagctcgaccgggaaggg
tttcgcgaccgtctgtcccgcgccgggtatcgtgccgtggagaccgtctacgaaccgggc
gagcacgcgctgcgcggcgccctgatcgacctctacccgatgggcagcgaccaccccctg
cgcatcgacctgttcgatgacgagatcgacaccctgcggcacttcgaccccgacacccag
cgctcgctggacaagatcgagcgaatcgagctgctgcccgcgcacgaatattcgctctcg
cgttcggcgatcgcctgtttccgcgaagggttcgagacgctgttcgacgtcgatccgcgc
caatgcccgctctacaacgatgcgctcaagggcatcccctctccgggtctggagcagtac
ctgccgctgttcttcgaggagaccgcgaccctgttcgagcatctggcggacaatacccgc
atcgccctgctgcccggcgtgcacgacgccgccgagcatcactggagcgccatcgagagc
cgttacgacaacctcggcgtcgaccccacgcgcccgttgctgccgccggcgcacgccttc
gtgccggttgccgaggtgttcgccgccatcaagcgccatccgcgcgtggcgatcgtcgag
gaagacgaacagcagccgcacgccgtggtgccgaccacccagccgcctcccgacgtcgcc
atcaatgcccgtgcgcatcgtccgctggccaagctcgaatcctttctcgccgcgcacgat
gacctgcgcatcctgctcgtcgccgaatccagcggccgtcgcgaggccctggaggaaact
ctcgcccccctggggcgcccgctggccgtggccgagggctggcagcactttgtggacggc
agtgccccgctggcgatctgcgagggcagtctcgacgaaggcctgtggctcgaggatgcg
agcacctgcgtcatcaccgagacggaactgtatggcgacgtcgtgcgccaggcacgtcgc
cggggccgcgccaccgacgacaacgagctcgccgtgcgtcacctggcggaactgcgtccc
ggcgccccggtcgtgcaccagagccatggcgtgggtcgctatcaggggctggaaaccctc
gaggccggcggccaggccgccgagttcctggcgctggagtacgccggtggcgccaagctc
tacgtgccggtggacagcctgcacctcatctcgcgctatgccggcgccaccgacgagctg
gcaccgctgcacaagctcggctcggagacctgggacaaggccaagcgcaaggccgccgaa
aagatccgcgataccgccgccgaactgctcgatacctatgcgcggcgcgaggcccgcgag
ggcttcgcctgtgccccgcccgacgaggactacgcgcgtttcgccgccagcttccctttc
gaggaaacgcccgaccagcacgcggcgatcgaggccgtcatcggcgacatgaccgccgcg
cggcccatggaccgcgtggtctgcggcgacgtcgggttcggcaagaccgaggtcgccatg
cgcgcggccttcctggcggtcgaatccggacgtcaggtcgtggtgctggtgcccaccacg
ctgctggcccagcagcactacgacaacttccgcgaccgcttcgcggataccgcggtgcag
atcgagctcatctcgcgcttcaccgccggcaaggggcagcaggcttcgctcgagcgcatc
accgaaggacgcgccgatatcgtcatcggtacccacaagctgctgtccaagtcgatgtcg
ctgcccaacatgggactgctgatcatcgacgaggagcaccgcttcggcgtctcgcagaag
gaaaagctcaagggtctgcgtgccgagatcgacatcctgacgctgacggcaacgcccatc
ccgcgcaccctgaacatggccatgagcggtatccgcgacctctcgatcatcgccacgccg
ccggcgcgccgtctctcggtcaagaccttcgtgcagcagcgcaacgagggggtcctgaag
gaagccctgctgcgcgagatcctgcgtggcggccaggtctacttcctgcacaacgaggtc
aagacgatcgacgccaccgccgccaagatcaccgaactggtgcccgacgcgcgagtgggg
atcgcccacggccagttgccggagcgcgagctggagcgggtgatgtcggacttctaccac
aagcggttcaacgtgctggtgtgctcgaccatcatcgagaccgggatcgacgtgcccagc
gccaacaccatcatcatcgaacgcgccgacaagttcggtctcgcgcagctgcaccagttg
cgcggccgcgtgggccgcagccatcaccaggcctatgcctacctgctcacgccgccgccc
aaggccatgacccgggacgccctcaagcgactcgaggcaatcggccaggcggaagacctc
ggtgccggcttcaccctcgccagtcacgacatggaaattcggggcgccggggaactgctc
ggcgacgagcagagcgggcagatggaaacgatcggctacagcctctatatgcaaatgctc
gatcgcgcggtcaaggccatcaagagcggcagaacgccgaacatcgaggcccccctcgac
gagggcgtggaagtcagcctcaatctgccggccttgatccccgacgactacctgccggac
gtgcagcagcgcctgatcatgtacaagcgcatcgccaatgccgagagcgagggcgagctc
aaggagctgcaggtggaaatgatcgaccgtttcggcctgctgccggcgccgctcaagacg
ctgttccgccagacccggctgcgtcagcgtgccgaacgcctgggcatcacgcggctggag
gcgggcgccgagcgtggccgcatgaccttcggtacccagacggccgtcgacccgatgacg
ctggtcgagatgatccagcgcgatcccgcccactatcgcctggatggggccgacaccctg
cgcttcgagggcgagatggccgacgaggagtctcgtttcgccctgctcgaagccttgctg
gagcgcctcaaccagaaggccaaggcggcgtga
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integrated database retrieval system
