Chromohalobacter israelensis: Csal_1592
Help
Entry
Csal_1592 CDS
T00347
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
csa
Chromohalobacter israelensis
Pathway
csa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Csal_1592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csa03019
]
Csal_1592
03009 Ribosome biogenesis [BR:
csa03009
]
Csal_1592
Enzymes [BR:
csa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Csal_1592
Messenger RNA biogenesis [BR:
csa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Csal_1592
Ribosome biogenesis [BR:
csa03009
]
Prokaryotic type
rRNA processing factors
Csal_1592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABE58945
UniProt:
Q1QX63
LinkDB
All DBs
Position
complement(1811577..1815104)
Genome browser
AA seq
1175 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFTKEPSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLTVPDKMGVIVRTAGIGRSPEELQW
DMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALH
FIRQVMPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRV
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSISLSI
MRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDMDTPHY
DVQRLRDDQVSEEDGQRSSFELPTTTELTQEPDPALDKPMQRAEAAVKSVAHNAPAPTSL
QHDTAPPATPTPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQSNDQAQQSG
ASKTTSEARRQRQGSDQSSTSRSDGDTGSKQRQNDDSRRDAGSGNGRGGNRRRRNGEESQ
DRQASRSDNRDGNRSSRSSRGNGGNGGRNENARGSGGSDKGRQDTRSDSRNDARNDSRSD
SRNDGRNATKGGNKPREENKDAKAGKPKAETPSQSAPDKQATSDKQTTPSQDDAPKSDGK
PKRTRNNPRQRSRKHAVNPNAVAEQEKLQAQQEAEGATSTGDNTQPQATAAQASPEAEPT
STAPSDAPAAAAAPTDEDESSQAAAAKSSQDAKSRNAKSKRSRNASKPARTASETADAAP
QGKTSADAPETAAEAPSQPREAAAAAQPADSATSEAPATANADTRASAPAPSADDASALS
EPKAPRDATPSAEAPADETSASDAPRGEVSDSQPASSAAADEATSTGRDTVEQEAATPVT
KDEAATAPATSSADADVDTRQDAASSTATPQDDTLATPASQAEQKASTDAPAPQAEPTTP
AAAAASSSDEQAPAEVSESQPQAEPKAPSDASATSSEEKASTETPAPQPEQTASTEASEP
QQATASAPRRRRRAHNDPREQRRLQENLFRGDDNA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctcatcaacgcgacacagcccgaagagctgcgcgtcgcgctcgtcgat
ggacaacgcctgtacgatctcgacatcgaatccggtgctcgggaacagaagaaagccaat
atctaccgtggccgaatcacgcggattgagcccagcctcgaagccgccttcgtcgatttc
ggcgccgaacgacacggcttcctgccgctcaaggaaatctcccgcgagtatttcaccaag
gagccttccggacgtcccaacatcaaggaagtgctcaaggaaggccaggaagtcatcgtc
caggtggacaaggaagagcgcggcaacaagggcgccgcgctgaccaccttcatcagcctg
gccggccgcttcctcgtgctgatgcccaacaacccccgtgccggcggcatttcgcggcgc
atcgagggggatgatcgggcccagctcaaggacgccatgggccagctgaccgtgcccgac
aagatgggcgtcatcgtgcgcaccgccggcatcggtcgttcccccgaggaactgcagtgg
gacatggattacctcgtgcaggtctgggaggccatcaccgaggaagccggcaagcgtagc
gcgccgtttctgatctatcgcgaatccaacgtcatcattcgcgcgatgcgcgactatctg
cgccacgacatcggcgaggtcttgatcgacagccccgaggtgcatgaagaggccctgcat
ttcatccgtcaggtcatgccctcctaccagaacaagatcaagctctacgccgacgacgtg
ccgctgttctcgcgtttccagatcgagtcgcagatcgagaccgcctatcagcgcgaggtc
aagctcccgtcgggcggcgccgtggtcatcgaccacaccgaggcactggtgtccatcgac
atcaactcggcgcgcgccacgcgcggcagcgatatcgaggaaaccgcgctgcagaccaac
ctcgaggccgccgacgagatcgcgcgccagttgcgtctgcgcgatatcggcggcctggtg
gtcatcgacttcatcgacatgacgccggccaagaaccagcgtgaagtggaaaaccgcgtc
cgcgacgcgctcaagctcgaccgtgcgcgcgtgcagatcgggcgcatctcgcgtttcggc
ctgatggaaatgtcgcgtcagcgcctgcgcccgtcgctgggcgagaccagcggcgtggtc
tgcccgcgctgcaacggccagggcaccatccgcgacgtgcgctccatttcgctgtcgatc
atgcgcctcatcgaggaagaggccatgaaggaacgcagttcccagattcgcgccattctc
ccggtgcccgtggcgacctacctgctcaacgaaaagcgcagcgtgctcaacgatatcgag
cagcgccagggagtgcaggtcgtccttctgcccaatcccgacatggatacgccgcattac
gacgtgcagcgcctgcgtgacgaccaggtcagcgaggaagacggccagcgctcgagcttc
gagctgcccaccaccaccgagctgacacaggaacccgatccggcactcgacaagccgatg
cagcgcgcggaagcggcggtcaagagcgtggcccacaacgccccggcgccgacctcgctg
cagcacgataccgcaccgccggcgacgccgacgccggcgcccgccgccgacgccccggcc
tccacgccggccgagagcggcctgttctcacgtctggtaaaaggactcggcaagctgctc
aacggcgaggacagcacctcgccgtcgaagcagtcgaacgatcaggcccagcagagcgga
gcctcgaaaaccaccagcgaggcacggcgtcagcggcaaggcagcgaccagtcgtccacc
tcgcgcagcgacggtgacaccggcagcaagcagcgtcagaacgacgatagccgtcgcgat
gccggctccggcaacggtcgcggtggcaatcgccggcgtcgcaacggcgaggaatcgcag
gatcgccaggcgtcgcgcagcgacaaccgtgatggcaaccgcagctcgcgttcctcgcgc
ggcaatggcggcaatggtggccgtaacgagaacgcacgcggcagcggtggcagcgacaag
ggccgccaggatacgcgtagcgactctcgcaacgacgcgcgcaacgactcgcgcagcgat
tctcgtaacgatggacgcaacgccaccaagggcggcaacaagccccgcgaggaaaacaag
gacgccaaggccggcaagcccaaggcggaaacgccttcgcagagcgcgcccgacaagcag
gccacgtccgacaagcagacgacgccgagccaggatgacgcgccgaagagcgacggcaag
ccgaagcgcacgcgcaacaatccgcgtcagcgcagtcgcaagcatgccgtgaatccgaac
gcggtcgccgagcaggaaaagctgcaggcgcagcaggaagccgaaggcgcaacgtcgacg
ggcgacaacacacagccgcaggccaccgctgcccaggcttcgcccgaggccgagccgacg
agcacggcacccagcgatgcgccggccgcagcggccgcccccaccgacgaggatgaaagc
tcgcaggcagcggcggccaagtcgtcgcaagatgccaagtcgcgcaacgccaagtccaag
cgctcgcggaacgcgtccaagccggcccggactgcctcggaaaccgccgacgcggcaccg
cagggcaagacgtcggccgacgcaccggaaacggcagctgaagcaccgtcccagccccgc
gaggcagcggccgccgcgcagccggccgatagtgccacctccgaggcaccggcgaccgca
aatgcggacactcgagcctctgccccggcgccctcggccgatgacgcctccgcgctcagc
gaaccgaaagcgccgcgcgatgcgacaccgagcgccgaggcaccggccgacgagaccagt
gcgtccgacgcgcctcgcggcgaggtcagcgactcccagccggcatccagcgctgccgcc
gacgaagccacgtccactggacgcgacaccgtcgagcaggaggctgccaccccggtgacg
aaggacgaggcggcgacagcgcctgccacgtcctctgcggacgccgacgtcgacacacgt
caggacgccgcgtcctccacggcaacgccgcaggacgacacgctagccacgcctgcatcg
caggcggagcagaaggcatcgaccgatgcaccggcgccgcaggcggagccgacaacgccg
gccgccgctgccgcctcgtcatccgacgagcaagcaccggccgaggtcagcgagtcccag
ccccaggcggagccgaaagcgccgagcgacgcttccgcaacgtcatcggaggagaaggca
tccaccgagacgcctgcaccgcagccggagcagacggcctcgacagaggcgtccgagccg
cagcaggcgacggcatccgcaccgcgtcgtcgccgtcgcgcgcacaacgaccctcgcgaa
cagcgtcgtctgcaggagaacctcttccggggcgacgataacgcctga
DBGET
integrated database retrieval system
