Castanea sativa (European chestnut): 142606698
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Entry
142606698 CDS
T11266
Name
(RefSeq) THO complex subunit 4A
KO
K12881
THO complex subunit 4
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142606698
09122 Translation
03013 Nucleocytoplasmic transport
142606698
03015 mRNA surveillance pathway
142606698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142606698
03041 Spliceosome [BR:
csaa03041
]
142606698
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142606698
TREX complex
142606698
Spliceosome [BR:
csaa03041
]
Complex C
Other components
EJC/TREX
142606698
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142606698
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
DUF6563
RRM_10
RRM_3
Motif
Other DBs
NCBI-GeneID:
142606698
NCBI-ProteinID:
XP_075634148
LinkDB
All DBs
Position
8
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AA seq
238 aa
AA seq
DB search
MTTALDMALDDIIKTNKQSSGSSNRGRARPSSGPGPARRLSNRSANRTGPYSTPKAPEST
WQHDLFLEENLGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYTIHYDRSGRS
KGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPTVAPAANGTVGNLNGIP
RGGQGRGGALGRPRGGSNGRGFRRGRGRGRGRGRGEKVSQEDLDADLEKYHEEAKQNN
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgctttagatatggccttagacgacatcatcaagaccaacaagcaatcttcc
ggatcctccaaccgaggccgcgcccgaccttcctccggacccggacccgctcgccgcttg
tccaaccgctccgccaaccgtacgggaccctattctactcctaaggctccagagtcgacg
tggcagcacgatttgtttctggaagagaatttggggcgagcctctgctattgagaccggt
accaagctctacatctcaaaccttgattacggtgtttccaacgaggacattaaggaactg
ttttcggaagttggcgacctgaaacgttatacaatccattatgacaggagtgggagatca
aagggaacggccgaagtagtcttctccagacgaggagatgctgtggctgctgtcaagagg
tacaacaacgtccagcttgatgggaaaccaatgaagatagagattgtgggtacaaacatt
gcgacacctactgtagctccagcagctaatggcactgttggaaatttaaatgggattccc
agaggtggacaagggaggggcggtgcactaggaaggccacgtggcggcagtaatggccgt
ggttttagaaggggtcgtggacgtggacggggaagaggccgtggtgaaaaggtatctcaa
gaagatcttgatgctgatttggagaagtatcatgaggaagcaaagcagaataattga
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integrated database retrieval system