KEGG   Castanea sativa (European chestnut): 142606698
Entry
142606698         CDS       T11266                                 
Name
(RefSeq) THO complex subunit 4A
  KO
K12881  THO complex subunit 4
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03013  Nucleocytoplasmic transport
csaa03015  mRNA surveillance pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142606698
  09122 Translation
   03013 Nucleocytoplasmic transport
    142606698
   03015 mRNA surveillance pathway
    142606698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142606698
   03041 Spliceosome [BR:csaa03041]
    142606698
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     142606698
    TREX complex
     142606698
Spliceosome [BR:csaa03041]
 Complex C
  Other components
   EJC/TREX
    142606698
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142606698
SSDB
Motif
Pfam: RRM_1 FoP_duplication DUF6563 RRM_10 RRM_3
Other DBs
NCBI-GeneID: 142606698
NCBI-ProteinID: XP_075634148
LinkDB
Position
8
AA seq 238 aa
MTTALDMALDDIIKTNKQSSGSSNRGRARPSSGPGPARRLSNRSANRTGPYSTPKAPEST
WQHDLFLEENLGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYTIHYDRSGRS
KGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPTVAPAANGTVGNLNGIP
RGGQGRGGALGRPRGGSNGRGFRRGRGRGRGRGRGEKVSQEDLDADLEKYHEEAKQNN
NT seq 717 nt   +upstreamnt  +downstreamnt
atgactaccgctttagatatggccttagacgacatcatcaagaccaacaagcaatcttcc
ggatcctccaaccgaggccgcgcccgaccttcctccggacccggacccgctcgccgcttg
tccaaccgctccgccaaccgtacgggaccctattctactcctaaggctccagagtcgacg
tggcagcacgatttgtttctggaagagaatttggggcgagcctctgctattgagaccggt
accaagctctacatctcaaaccttgattacggtgtttccaacgaggacattaaggaactg
ttttcggaagttggcgacctgaaacgttatacaatccattatgacaggagtgggagatca
aagggaacggccgaagtagtcttctccagacgaggagatgctgtggctgctgtcaagagg
tacaacaacgtccagcttgatgggaaaccaatgaagatagagattgtgggtacaaacatt
gcgacacctactgtagctccagcagctaatggcactgttggaaatttaaatgggattccc
agaggtggacaagggaggggcggtgcactaggaaggccacgtggcggcagtaatggccgt
ggttttagaaggggtcgtggacgtggacggggaagaggccgtggtgaaaaggtatctcaa
gaagatcttgatgctgatttggagaagtatcatgaggaagcaaagcagaataattga

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