Castanea sativa (European chestnut): 142606740
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Entry
142606740 CDS
T11266
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-1-like
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csaa03016
]
142606740
Enzymes [BR:
csaa01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
142606740
Transfer RNA biogenesis [BR:
csaa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
142606740
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
DNA_processg_A
Motif
Other DBs
NCBI-GeneID:
142606740
NCBI-ProteinID:
XP_075634190
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All DBs
Position
8:22204633..22206508
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AA seq
299 aa
AA seq
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MEPRWKGKGFKAKALAEPMSKIVSQLQSSLIQSDAHGLLAGCTVLIAVKPEQTDLLDHSC
FGKRIVTAENDNEWFQLGLEEAFYLCFSLKCLKIVGDDKCPKDDVELWQCMISRKPNFPD
FYKAYSHLRMKNWVVKSGLNYGVDFVAYRHHPSLVHSEYAVLVLSAGEDEGNGRLRLWSD
LHCTTRVSGSVVKTLLVLRITKTGNGVASPSCLEKYTVVGRTIRRWHPEQCREDNVIGEN
RTKQQEALGKASLKTKFTQKHDVKLKPGLVGIERGFSLVSISLVFALISFIVSRWFWSN
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggagcccagatggaaaggaaagggcttcaaagctaaagctcttgcagagcccatgtca
aagatagtatcccagctgcagtcttcgctaattcaatcagatgctcatggattgcttgct
gggtgtactgtacttatagctgtaaaaccagagcaaactgatcttcttgaccattcgtgt
tttggtaaacgcattgttactgctgaaaacgataatgagtggtttcagctgggtctagaa
gaagccttttacctatgtttttcgttaaagtgtctcaagattgtaggtgatgataagtgt
ccaaaggatgatgtagagctttggcagtgcatgatctcccgaaaaccgaatttccctgat
ttctacaaggcttattctcatcttcggatgaagaattgggttgtcaagtcgggtttgaat
tatggagtggattttgttgcctaccggcaccacccgtctctggtccattctgaatatgct
gtgcttgtgttatcggcaggagaggacgagggaaatggccggttgaggttgtggtctgat
cttcattgcactactcgagttagtggaagtgttgtgaagacacttttggttcttaggatc
actaaaactggtaatggtgttgcctctccgtcatgtttggaaaaatacactgttgtaggg
cgaacaatcagaagatggcatccagaacaatgccgtgaagataatgtgataggggaaaac
agaaccaagcaacaagaagctcttggaaaagcaagtttaaagaccaaatttactcaaaaa
catgatgtgaaattgaagccgggcctagttggaattgaacgaggttttagtctagttagt
attagtcttgtttttgccttgatttcctttattgtaagccgttggttttggtctaattaa
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