Castanea sativa (European chestnut): 142606833
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Entry
142606833 CDS
T11266
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csaa03016
]
142606833
Enzymes [BR:
csaa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
142606833
Transfer RNA biogenesis [BR:
csaa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
142606833
Prokaryotic type
142606833
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
142606833
NCBI-ProteinID:
XP_075634301
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All DBs
Position
8:complement(32044600..32051284)
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AA seq
503 aa
AA seq
DB search
MALSSLRFPLSPNLLKTPTFSFALLRIPILPLTTPYCSTSTPLKWEPFRKKKVVLRIGYV
GTDYRGLQKQIEEHALSTIENELETAIFKAGGIRESNYGNLNKIAWGRSSRTDKGVHSLA
TTISLKMEIPDNAWKDDPHGLALANHINSYLPENIKVFCVLPSQRSFDPRRECNLRKYSY
LLPAEIIGIKSYFGGAEADYHISDFKDILNSFEGEHPFHNYTIRSKYRKQFPAKRSLGNG
SVPRRAKLSGEASASEFEESDGEEDVVIDGAIASDVEKMSENSSESSSSQENLADTCDKH
KNGHNTNLIRARWLHEPDDMDRISASHFRKISCCSCGKLEKSLGFAYIEVSIWGESFMLH
QIRKMIGTAVAVKRNLLPRDILTLSLTKFSRIVLPLAPSEVLILRGNSFTLRNKPGDVKR
PEMLTMVESEEILKVVDEFYISVMLPEVSKFLDPTGSPWKDWVEKLDEHTSIPDVQINEV
RKAWKLWKEKFQSSGNVASVINQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggccctctcttcccttcgtttcccgctctccccaaacctcctgaaaaccccaaccttc
agtttcgcacttctcagaatcccaatattacccctaacaacaccatactgctcaacctca
acaccattgaaatgggaacctttccgcaaaaagaaagtcgtcctgcgaatcggctatgtc
ggaaccgattacagaggtctacaaaagcaaatagaggaacacgcattatccactattgaa
aatgaattggagaccgccatctttaaggccggtggtatccgcgaaagtaattatgggaat
ctgaacaaaattgcgtggggcagaagtagccgtactgataaaggagtgcattccttggca
acgacgatatcattaaaaatggaaatccctgataatgcatggaaagacgaccctcatggc
ctggctcttgcgaatcacattaactcttatcttcctgaaaatattaaagtgttttgcgtt
ttaccatcacagaggagctttgatcctagaagggagtgtaatcttcggaagtattcttat
ctccttcctgctgaaattattggaatcaaaagttactttggcggagctgaagctgattat
catatatcggacttcaaggatatattaaattcctttgagggagaacatcctttccacaat
tatacaatacggtccaagtacaggaagcagtttcctgcaaaacgatcacttggaaatggc
agtgttcctcgcagagcaaagttatctggtgaggcatcagcctctgagtttgaggaaagt
gatggagaagaagatgttgtaattgatggggcgattgcatcagatgtggagaagatgagc
gaaaattcttcagaatccagcagttctcaggaaaatctagctgacacttgcgataagcat
aagaatggtcacaataccaatttaattcgtgctaggtggcttcatgaacctgatgatatg
gacaggataagtgcttcccacttcagaaagatctcttgctgttcttgtggaaagctggag
aaatcacttggatttgcttacattgaggtttccatatggggagagtctttcatgttacat
caaatccgcaaaatgattggcacggcggttgctgtaaagcgcaacttactccccagagat
attctaacattatcacttactaagttctcacgtattgttctaccccttgccccatctgaa
gttttgattttgaggggaaacagtttcactctgagaaacaaaccaggagatgtgaagagg
cctgaaatgctaacaatggttgaatcagaagaaattttgaaggtggttgatgaattctac
atatctgtaatgttgcctgaagtttcaaagttcttggaccctacgggttctccttggaag
gattgggttgaaaaattggatgaacatacaagcattccagatgtacaaataaatgaagtc
aggaaagcttggaaattatggaaggaaaagtttcagagtagtggcaatgttgcatcagtg
ataaatcaatga
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