Castanea sativa (European chestnut): 142607069
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Entry
142607069 CDS
T11266
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142607069
09123 Folding, sorting and degradation
03018 RNA degradation
142607069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142607069
03041 Spliceosome [BR:
csaa03041
]
142607069
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142607069
mRNA cycle factors
Stress granule specific factors
142607069
Spliceosome [BR:
csaa03041
]
Complex C
Other components
Complex C specific factors
142607069
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_ACIN1
RRM_occluded
RRM_7
RRM_MUD2_C
RRM_3
RRM_RdRP1_2
RRM_11
RRM_Nup35
SET_assoc
RBD_DGKtheta
C16C6_04
Motif
Other DBs
NCBI-GeneID:
142607069
NCBI-ProteinID:
XP_075634599
LinkDB
All DBs
Position
1:3964102..3973714
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AA seq
649 aa
AA seq
DB search
MAQIQVPVSGQNGVVSGAGAGANQFVTTSLYVGDLDVNVSDSQLYDLFSQFGQVVSVRVC
RDLSTRRSLGYGYVNYANPQDAARSLNLLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFI
KNLDKAIDHKALHDTFSSFGSILSCKVATDANGQSKGYGFVQFESEESAQNAIDKLNGML
INDKQVYVGHFLRKQERDGAFNTTKFNNVFVKNLSEVTTDEDLKNIFGEFGAITSAVVMR
DADGRSKCFGFVNFESADDAAKAVEALNGKKHDDKEWYVGKAQKKSERELELKGRFEQSM
KETVDKYQGLNLYVKNLDDSINDEKLQDLFSEFGTITSCKVMRDPSGISRGSGFVAFSTS
EEASRALDAMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAIAPSMAPRMPIYPP
GAPGLGQQFLYGQAPPALIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPMPQQGQQGQRPG
GRRGAGPVQQTQQPVALMQQQMIPRGRVYRYPPGRNMPDVPMQGMAGGMLSVPYDISGVP
MRDAALGQPLPIQALATALANAKPEQQRTMLGEALYPLVDQLEHESAAKVTGMLLEMDQT
EVLHLLESPDALKAKVAEAMEVLRNVAQQQAKGPADQLAALSLNDNIIT
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggttcctgtgtcgggtcagaacggtgtcgtttctggtgctggagcc
ggagcgaaccagttcgttacgacgtcgctttacgtcggagatcttgacgtgaacgtctcg
gactcgcagctctacgatctgttcagccagtttggtcaggtcgtttcggttcgggtctgt
agggacttgagcactcggcgatctcttggctatggttacgttaactatgccaaccctcag
gacgcggcgaggtcattgaacttactgaatttcactccactgaacaacaagcccatcaga
atcatgtattctcatcgggaccctagcatacgcaagagtggtactgcaaatatatttatc
aagaatctggacaaggcaattgaccacaaagcattacacgatactttttcttcttttgga
agtattctctcttgcaaggtagctactgatgccaatggccagtccaaaggctatggtttt
gttcaatttgaaagtgaagagtctgcacagaatgccatagacaagttgaatggcatgctg
atcaatgacaaacaagtgtatgttggacactttcttcgtaagcaggaaagagatggtgct
tttaatacaaccaaatttaataatgtttttgtgaaaaatctatcggaagtgacaaccgat
gaagatttgaagaatatttttggtgaatttggagcaattaccagtgctgtagtgatgagg
gatgctgatggaagatcaaagtgctttggttttgtcaactttgaaagtgcagatgatgct
gctaaagcggttgaggcactaaatggtaagaaacatgatgacaaggaatggtatgttgga
aaggcacaaaaaaaatctgagagagagcttgaattgaaaggaagatttgagcagagtatg
aaggaaactgttgacaaatatcaagggttgaatctgtatgttaagaatttggatgatagt
atcaatgacgaaaaactacaggatttgttctcagagtttggtacaatcacttcatgcaag
gtcatgcgtgatcccagtggaattagtagaggttctggatttgttgctttctcaacttct
gaagaagcttctcgagctcttgatgccatgaatggtaaaatggttgtcagcaaacctctc
tatgttgcacttgcacagcggaaagaagagagaagggcgaggttgcaggcacaattttca
caaatgaggccaattgctatagcgccttctatggctccacgtatgccaatttaccctcct
ggtgctccgggtcttggtcaacaatttttgtatgggcaagcacctccggctctaattcct
ccacaagctgggtttggttaccagcaacaacttgttcctggaatgaggcctggaggagct
ccaatgccaaatttctttgttcctatgcctcagcagggtcagcagggccagcgcccaggt
ggacgacgtggagctggtcctgtgcaacaaacccaacagcctgtggcactgatgcaacag
cagatgattcctaggggacgtgtctatcgttatccaccagggcgcaacatgccagatgtt
ccaatgcaaggtatggctggaggcatgctatcagttccttacgacattagtggtgtgcca
atgcgagatgctgcactgggacagcccttgcccattcaggctttggctacagctcttgca
aatgctaaacctgagcagcagagaacgatgctgggtgaagctttataccctctagtggat
cagctggagcatgaatcagcagccaaggttactggtatgcttctggagatggaccagact
gaggtgctgcatttgctcgagtcaccggatgctttgaaggcgaaagttgcagaggctatg
gaggtcctgaggaatgttgcacagcaacaggcaaaaggccctgctgatcagctagctgca
ctgtcattgaatgacaatattatcacttga
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