Castanea sativa (European chestnut): 142607233
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Entry
142607233 CDS
T11266
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13 isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
csaa
Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142607233
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
142607233
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Ortholog
Paralog
GFIT
Motif
Pfam:
MID_MedPIWI
Med13_N
Med13_C
Motif
Other DBs
NCBI-GeneID:
142607233
NCBI-ProteinID:
XP_075634769
LinkDB
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Position
8:complement(48167661..48192181)
Genome browser
AA seq
1976 aa
AA seq
DB search
MWTNVFKIGNLNQISWFQFLPHEADLNPLPEKGVKVEQKDTATLLVLSSHLQLQKEGFLS
TWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGHHSSVVENAQSAVSRLRVVASGIWLAPGD
SEEVAAALSQALRNRIERSLIGLSYMRFGDVFSKYCPSQSEEILRKGQPTVEFIFAATEE
AVFVHVLVSAKHIRALSSGEVERVLNRSSNNSGYRLPVIVSPHGIRGRLTGCCPSDLVKQ
VFFSSGRFKTSNGFIGLPHHVSQGSGCQMRGQNCYVEVTLGCPRSGSDNALQSNTVSMRN
LPKNHVAESPAVGRGDQKGSPDQIPVYEKTFIYPAEAVLVPVLHTSFARSSLKRFWLQNW
IGPSLPGSSFFMHCASNMDFMEGSTAEINGIHTKHGYNSSSNSNTSSIGSISSSSSDSDH
KMTAGARELEADADSLTCRQSGLSSNDQSENDCTKMGSKRPRTGMGAATNALVQDASKSD
FSSMDVNNSAITGVANEQIGSQWDWDDDDRGMPMDIQALLSEFGDFGDFFENDTLPFGEP
PGTAESQALIFSAPDCGDVGSSPVGMMDVSDQVLLPGNFQSFENFDPPPPVAQEESLSKN
HEVANNSLSSGLVNHTAASSTGEFDHIIKAEALLTFASEYGAVETPTSELSSSIFRSPYF
PKSRKVESSNSSPNNYIYGATPPSSPCYDGSDEKTSMAMNSKTCPSDSKKYYTHVDAGKE
QHDKRSFSGNNSILTSEGAAPSTFSNLNSTNAVKSSLRKVTEGNLEVAQFLLSMKTVLAT
EVECIMFQASMCRIRHTLLASSSLTPIGFSRLTGSTVLNHLPGDQSTMTDDISGKYEVKK
KESIPVRIAGDFDGGVLDGHLNAPVGVWRSVGVPKVSKPSNSPSMEVSASLPHNSFHEEG
ILSFGKRQPLLELLDGMALLVQQATSSVDLALDGDCGDGPYGWLALQEQWRRGFSCGPFM
VHAGCGGTLASCHSLDIAGVELVDPLSANVHASSAISLLQSDIKTALKSAFNTLDGPLSV
TDWCKGRNQSGDAGSAGDGFSADSSMSECRDSLSTVTHSVGEPISPSQSSAGGLSGLKVS
SAMDGAKVDETSQRRSNQEICNSDSELQLCTRLRPTLFVLPLPAILVGYQDDWLKTSASS
LQVWEKAPLEPYASQKPITYSVICPDIDPLTTAAADFFQQLGTVYETCKLGSHSPQCLGN
QMEIDSGKGSSSGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLTSYLKSLSKVL
KGLKLGPCLPTNPKEGSSGPCMVIYVVCPFPEPIAVLQTVIESSVAVGSVILQSDREKRL
ISHSQVGKALSCSAAVDEATISNVLVLSGFSIPKIVLQIVTVDAIFRVTSPSLHELVILK
ETAFTVYNKARRISRGSSNDINQSSSLSSRSSSVMSQMSSPIPGMWKDCVGPRITGHSLP
REGEIDASLRAGSWENWQTTRTGGLSCEPIRTGDYSLQDEIRFMFEPLFILAEPGSVEHG
VSPAIFGNIVSESSKPLSDDSGAGFMQGSSSAASADAGSSSQLDGSEPDGFGSSHQKTPP
SLHCCYGWTEDWRWLVCIWTDSRGELLDSHVFPFGGISSRQDTKGLQCLFIQVLQQGCQI
LQACSSPDIGVAKPRDFVIARIGSFFELEYLEWQKAINSVGGSEVKKWPLQLRRSVRDGI
LASSNGASLQQQEMSLIQERNLPSSPSPLYSPHTKASGFIKGGLGQPAARKQLMGGHTVV
DSSRGLLQWVQSISFVSLSIDHSLHLVFQSDSSSPGGTQGGSSMGPSGYHEGFSPVKSLG
ATSASYILIPSPSMRFLPPSPLQLPTCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAVPS
MRKDYRSNLKEEWPSVLSVSLIDYYGGTNILQDKIFRGVHKGRNLSSEAKDFEIETHLVL
ESVAAELHALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSRQPEKSQV
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgtggaccaatgttttcaaaattggaaatcttaatcaaatatcatggttccagtttctt
cctcatgaagcagatttgaaccctctacctgagaaaggtgtgaaagtagagcaaaaagat
actgctacattgttggtgctttcatcgcatctacagttacaaaaggaaggatttctcagc
acctggaccaattcctttgtggggccctgggatccatctcagggtttgcacaatcctgat
gagaaaatcaagctatggctttttcttcctgggcatcattcatctgttgttgaaaacgct
caaagtgcagtctccagattaagagttgttgcatctggaatttggttggctcctggggat
tccgaagaggttgctgctgccctttcacaggctttaaggaatcgtatagaaagatcactg
attggactttcctacatgagatttggagatgtattttcaaagtattgtccatctcaaagc
gaggaaattttgaggaaagggcaacctacggttgagttcatatttgctgccacagaagag
gcagtctttgtacatgttctagtatcagcaaagcatatcagggcactgtcaagtggtgaa
gtcgaaagagtattaaaccgttcgtccaataattccggttacagacttccagtgattgtt
tctcctcatggaattcgtggtaggcttactggatgttgtccaagtgatcttgtcaaacaa
gtgtttttcagttctggcaggtttaagacttcaaatggatttataggtctaccacatcat
gtttctcaaggttctggttgccagatgaggggccaaaattgttatgttgaagttactctt
ggctgccctagatctggaagtgacaatgcgttgcaatcaaacactgtttccatgagaaat
ttgcccaagaatcatgttgctgaatctcctgctgttggaagaggtgatcagaagggatca
ccggatcaaataccagtatatgagaagacattcatatatccagctgaggcagtgcttgtc
ccagtcttgcatacatcatttgcccgatcttctctgaaaagattttggctacaaaattgg
ataggaccttcattacctggatcgtctttctttatgcactgtgctagcaatatggacttc
atggaaggatcaacggctgaaatcaatggaatacacaccaagcatggttataatagtagt
agcaatagtaacaccagcagtattggcagcatcagcagcagctccagtgatagtgatcac
aagatgaccgctggagccagagaacttgaggcagatgctgattctttaacatgtagacag
tctggtttatcttctaatgatcagtcagagaatgattgcacaaaaatgggttcgaagcgt
cctcgaactgggatgggtgcagctacaaatgctcttgtgcaagatgcaagcaagtctgat
tttagttccatggacgtcaacaattctgccataacaggagttgcaaatgagcagattgga
tctcaatgggattgggatgatgatgacaggggtatgcccatggatatccaagctcttctc
tctgagtttggagattttggcgacttcttcgaaaatgacactttgcctttcggggagccc
ccaggaactgcagaatcacaggcgcttatcttttctgcaccagattgcggagatgtaggt
agtagtccagttgggatgatggatgtttctgatcaggtgctattgcctgggaattttcaa
tcctttgagaattttgatccacctcctccagtagcccaagaggagagtctcagtaaaaat
catgaagttgcaaataacagtctgtcgtcaggtctggtgaaccacactgcagcatcttct
acaggtgagtttgatcatataataaaagctgaagcactgttgacatttgcttctgaatat
ggagctgtggagaccccaacaagtgagttgtcatcatcgattttcagaagtccatatttt
ccaaaatctcgaaaagttgagagttcaaattcaagtccaaacaattacatatatggtgca
acaccaccctcttctccttgctatgatggatctgacgagaagactagcatggccatgaac
tcaaaaacatgtcctagcgactcaaaaaagtattacactcatgttgatgcagggaaagag
caacatgataaaagatcattttcaggtaataatagcattcttacgtctgagggggcggca
ccttctacattttctaatctcaattctacaaatgctgttaaatcttccctgaggaaagtg
actgaaggcaaccttgaagtggcgcaattccttttgtctatgaagacagtgcttgcgaca
gaagttgaatgcattatgttccaggcctccatgtgcaggattaggcacacactattagct
tccagtagccttacacctattggttttagtagattaactggaagtactgttttgaatcac
ctgcctggtgaccagagtaccatgacggatgatatatctggcaaatatgaggtgaaaaag
aaagaatctataccagttagaatagctggtgattttgatgggggagtgctggatgggcac
cttaatgcacctgttggtgtctggcgctctgttggagttcccaaagtttcaaagccctca
aattctccaagtatggaagttagcgcttccttgcctcataattcattccatgaggaaggc
atcctttcttttgggaaaaggcaaccgcttctggagcttcttgatggaatggcattactt
gtccaacaagctacttcctctgttgatctggccctagatggagactgtggtgatggtcct
tatggttggcttgcattacaggagcagtggaggcggggattttcttgtgggccttttatg
gttcatgcaggttgtggggggacactggcttcatgtcattccctagacattgctggtgtg
gagttagtggatccactttctgctaatgttcatgcttcgtctgcgattagtttgttgcag
tctgacataaagactgccttaaaatccgcctttaacactttggatgggccattatctgtc
actgattggtgcaaaggccgcaatcaatcaggtgatgctggaagtgcaggtgatggattt
tctgctgattcttctatgagtgagtgtagagattctttgagtactgtaacacactctgtt
ggagaaccaataagtccatcccagtcttctgctggtggattatctggcctcaaagtgtct
agtgccatggatggagctaaggtggatgagacatcccaaaggagatctaaccaagaaatc
tgtaattcagattcagagctgcaactatgcacccggctaagaccaacacttttcgtgctt
cctttgcctgctatacttgttgggtaccaggatgattggctcaagacatctgcaagctcc
ctacaagtgtgggagaaggctcctcttgaaccatatgcttcgcagaaacctattacttac
agtgttatatgtcctgacattgatccacttactactgctgctgctgattttttccaacaa
ctaggaactgtctatgagacatgtaaactaggtagtcattcaccacaatgtttgggaaac
caaatggaaatagattctggaaaagggtcatcttctggttttgttctactggattgtcct
caatcaatgaagatagaaagcagtaatgcatctcttgtgggctcaataagcgattatttt
ctttccctttcaaatggttgggacttgacgagctatctcaagtcactttcaaaggttcta
aaaggcctgaaacttggtccatgcttgcccacaaatccaaaagaaggaagcagcggtcct
tgtatggtaatatatgtggtgtgccctttccctgagcctattgcagttctacaaactgtt
attgaatcttctgttgctgttggatcagtcattctccaatcggatagagagaaaagattg
atatcgcacagtcaggttgggaaggctttaagctgctcagcagctgtggatgaagcaaca
atatcaaatgttctagtactttcggggtttagtattcctaaaatagtactgcagattgtg
acagttgatgccatttttagagttacaagtccatcacttcatgagcttgtcattcttaaa
gagacagccttcactgtttacaacaaggctcgtagaatttctcgaggatcctctaatgat
ataaaccagtcatcatcattatctagtagatcttcctcagtcatgtcacaaatgtcttct
cctattccagggatgtggaaggactgtgtaggtcctcgaattactgggcattcccttcca
agagagggtgaaatcgatgctagccttagggctggttcttgggaaaattggcaaacaaca
aggactggggggttaagttgtgagccaattagaactggagattattccctgcaagatgaa
attcgtttcatgtttgaacctctttttattctagctgaacctggttctgtggagcatgga
gtttcacctgcaatttttggtaacatagtatcagaatcttcaaagccattgtctgatgat
agtggtgcaggctttatgcagggttcaagttcagcagcaagtgcagatgctggatcaagc
tctcaacttgatggatctgaacctgatggctttggatctagccatcaaaagactcctcca
agcctgcattgttgttatggatggacagaggattggcgttggctagtatgcatctggaca
gactcaaggggagaattgcttgacagccatgtattcccctttggtggaatcagcagcagg
caggacactaagggtctgcaatgccttttcattcaagttctgcagcaaggctgtcagata
cttcaggcctgctcttctcctgatattggtgtagccaagcctagagattttgtgattgca
cgcattggaagtttttttgaacttgaatacctagagtggcagaaagccattaactcagtt
gggggttctgaggtgaaaaaatggcctcttcaactgcgacgatccgtgcgtgatggaatt
cttgcaagcagtaatggtgcatccttacagcaacaggagatgagtttgattcaagagaga
aacctaccttcctcacctagtcctttgtatagccctcacaccaaagcttctggatttata
aaaggtggcttaggacaacctgcagctagaaagcagcttatgggtggccatacagtggtt
gacagctctagaggtttgcttcagtgggtgcagagtatcagttttgtttcactttcaatt
gaccattctttacatttagtttttcaatcagattcgtcatcacctggaggtactcaaggt
ggtagcagtatggggccatcgggctatcatgaagggttttcccctgtaaagtctcttggt
gctacatctgcttcatacattttgatcccatcacccagcatgcgctttctccctccatca
cctcttcagctcccaacatgcctcactgctgagtcacctcccctggcccatctccttcac
agcaagggctctgcaattccactttccactggttttgtggtttcaaaagctgtaccttcc
atgaggaaagactatagaagcaacttgaaagaagaatggccttccgttctttctgtcagt
cttattgattattatggaggcactaatattttgcaagacaaaatttttcgaggtgtccac
aaaggtaggaatttaagctcagaggctaaagattttgaaattgaaacccatttagttctt
gagtctgttgcagcagagcttcatgcgctatcatggatgactgttagccctgcatactta
gagcgacgaactgcattgcctttccactgtgacatggttttaagactcagaaggctactt
cattttgctgataaagagctctctcggcagccagagaagtcacaagtgtag
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integrated database retrieval system
