Castanea sativa (European chestnut): 142607349
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Entry
142607349 CDS
T11266
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142607349
09122 Translation
03013 Nucleocytoplasmic transport
142607349
03015 mRNA surveillance pathway
142607349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142607349
03041 Spliceosome [BR:
csaa03041
]
142607349
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
142607349
Spliceosome [BR:
csaa03041
]
Common components
Common spliceosomal components
Cap binding complex
142607349
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
SINE3_TM
CCDC39
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
142607349
NCBI-ProteinID:
XP_075634916
LinkDB
All DBs
Position
8
Genome browser
AA seq
862 aa
AA seq
DB search
MSSWSHLLLRIGDKSPEYGTSADFKDHIETCFGVLRRELEHSEEEILKVLLDCAEQLPHK
IPLYGTLIGLMNLENEDFVRKVVEKTQANLQDGLDSGNCNRIRILMRFLTVLMCSKVIQP
SSLVVVFETLLSSAATTVDEEKGNPSWQACADFYITCILSCLPWGGAELMEQVPEEIERV
MVGVEAYLSIRRHASDTGLSFFEDDDETENGEKDFLEDLWSRVQDLSNNGWKLDSVPRPH
LSFEAQLVAGKSHEFVPISCPEQHHSSSTLSVINHGQQKHEAELKYPQRIRRLNIFPASK
AEDLQPIDRFVVEEYLLDVLFFFNGSRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQ
PPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRTLFEKIADLDMECQTRLILWFSHHLSNF
QFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGG
PNFIFSVEGDRERTEQHALSADLCNMVKGRAAASEIISWVEKSVLPVHGLEVTLKVVVQT
LLDIGSKSFTHLITVLERYGQVIAKLCPDQDKHAMLIAEVGYYWKNNAQMAAIAIDRMMG
YRLVSNLAIVRWVFSPENIDQFHTSDHPWEVLRNAVSKTYNRISDLRKEISSLKKAIISA
EEAATKAKVELEAAESKLSLVDGEPVLGENPAKLTRFKSNAEKTKEEEVSVRESLEAKDA
LLARALDENKALFLSLYKNFSIVLTERLPDPSRAGTLRELKSTNADSMAVDLEESAAMEV
DNENGRQKSQSNGGRTSNGYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHIEKLELEVLT
ENTHPLFRKAVYCGLRRPNNQA
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggagtcatcttcttctccgaatcggtgacaagtcaccggagtacggcacc
tccgccgacttcaaagaccacattgaaacatgtttcggcgtacttcggcgagagttggag
cactctgaggaggaaattttgaaagtccttctcgattgtgctgaacaattacctcacaaa
attcctttatatgggacactgattggcttgatgaacctggaaaatgaagacttcgttagg
aaagtagtggagaaaactcaagctaatcttcaggatggcctggattctggaaattgcaac
aggattcgtattttgatgcgatttctgactgttttgatgtgcagtaaagtcatccaaccc
agttcgctggttgttgtatttgagacattattatcatcagctgccacaacagttgatgag
gagaagggaaatccctcttggcaagcatgtgctgacttttacataacttgcattttatct
tgtctcccgtggggaggagcagaactgatggagcaagtacctgaggagattgagagagtc
atggttggtgtagaagcttacttgagcatcagaaggcatgcttctgacactggtttatct
ttttttgaagatgatgatgaaactgagaatggtgaaaaggatttcctggaagatttatgg
agtcgggtacaggatttatccaacaatgggtggaaacttgacagtgttcctagacctcat
ctttcatttgaagctcagctggttgctggaaagtctcatgagtttgtgcccatcagctgc
cctgagcaacatcattcatcttcaacactttctgtgataaatcatggtcaacaaaagcat
gaagcagagttaaagtatcctcaaaggatacgtaggctaaatatatttccagccagtaaa
gctgaggacctacaacctattgatcgattcgttgtggaagagtatctcctagatgtgctt
ttcttctttaatggcagtcgaaaggaatgtgcttctttcatggttggcctgcctgtatct
ttcagatatgagtatcttatggcagagactattttctcccagttacttatgcttccacaa
ccccctttcaagccaatatattacacactggtcatcattgacctctgtaaggctcttcct
ggggcctttcctgctgttgtagcaggtgcagtccgcactctttttgagaaaatagccgat
ttggatatggaatgtcagacaaggctcatcctttggttttcgcatcacctatcaaacttc
caattcatctggccatgggaagagtgggcttatgtcttagacctcccaaaatgggccccg
cagcgcgtgtttgttcaggaggttttggagagagaagtccgtttgtcgtactgggacaaa
gtcaagcagagcatagagaatgcacctggtttagaagaactgcttcctccaaagggtgga
ccaaacttcatattcagtgttgaaggtgatagagaaagaactgaacagcatgcactttct
gcagatctgtgtaacatggtcaaaggaagggcagctgccagtgaaataatttcttgggtt
gaaaaaagtgtgcttcccgttcatggtctggaagttactcttaaagtggttgtgcaaact
ctccttgacattggatctaaaagctttactcatttgatcactgtcttggagagatatggt
caagtaattgcaaagttgtgtcctgatcaagataagcatgccatgcttatagctgaagtt
ggttattactggaagaataatgctcaaatggcagctatagcaattgataggatgatggga
tataggcttgtatctaatttggccattgtgagatgggtcttctctccagaaaatattgat
caatttcatacatctgatcatccatgggaggttctaagaaatgcagttagtaagacatat
aatcgtatctcagatcttaggaaagaaatatcatctcttaagaaggctattatatcagct
gaagaagctgcaacaaaggcaaaagtcgagttagaggctgcagagtcaaagctttcactt
gtagatggtgaacctgttcttggtgaaaaccctgcaaaattgactcgtttcaaatccaat
gctgaaaagacaaaagaggaggaggtatcagtacgtgagtctttggaggctaaggatgct
cttcttgctcgagcccttgatgaaaataaggcgttgttcctctctttgtacaaaaacttc
tctatagtattgacggaacgattgcccgacccttctagagctggaacattgcgggaatta
aagtctactaatgcagattcaatggcagttgaccttgaagaatcagcagcaatggaggtg
gacaatgagaatggcagacaaaaaagtcagtcaaatggtggaaggacaagcaatggctat
aacataggtgaaaaagagcagtggtgtttgtcgactttgggctatgtcaaggccttctca
agacaatatgcttctgagatatggcctcacattgagaagttggaattagaggtattaacg
gagaacacacatcctctctttcgaaaagctgtttattgtggtcttcgtcgaccaaacaat
caggcgtga
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