KEGG   Castanea sativa (European chestnut): 142607381
Entry
142607381         CDS       T11266                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142607381
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142607381
   03041 Spliceosome [BR:csaa03041]
    142607381
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     142607381
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     142607381
Spliceosome [BR:csaa03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    142607381
SSDB
Motif
Pfam: RRM_1 RRM_7 Plexin_cytopl CDC45 Nop14 Cwf_Cwc_15
Other DBs
NCBI-GeneID: 142607381
NCBI-ProteinID: XP_075634954
LinkDB
Position
8:49576717..49580572
AA seq 516 aa
MGKKRKSASKVEEASSSSKPKLLKIQPPPPPPPPPAEESEEEEEHAESEPEEVEAEEEES
SSSSSSSESEEEEEEEEEEEEEEAAAVAEEESDDKSSSSSSSEEEDEEEEEEEEDDDSKR
DSIKRLLEPFVKDQLIAILKEAASKTPSIIEHITKTVDADPIQRKIFVHGLAWDTDSETL
AAAFKPFGAIEECKVVTDKITNRSKGYGFILFKTSASARKALKQPQKKIGSRMAACQLAS
SGGNQSQQQHQQPPSQPAPVSGRRLYVANVGPHIAPERLRAFFAEFGELEDGPVALGGLD
KDTGKFKGFAILVYKSVEGVKKALEEPVKFFQGNKLQCSVATEGRSVNKNNNSNSNSNSN
DAKPNNVVATSVAGVAPPLPVAAFNPALAGQAFNPGQAFNPGQAFNPGAVFMAQNPALGV
LNLNHVGFGFPGGVSQPLNRVGNAPNPMGLTQLSAGFGAQPPINSISPSVIGSYGAQAAL
QGLGAYQGSQMAQSSAVPRPQTGTGPVGTMPSYLGR
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgggcaagaagcgcaaatcagcctccaaagtcgaagaagcttcttcttcttctaaacct
aaattgctcaaaatacaaccaccaccaccaccaccaccaccacccgcagaagaatctgaa
gaagaagaagaacacgctgaatcagaaccagaagaagtagaagcagaagaagaagaatca
tcatcatcttcttcttcatctgaatcagaagaagaagaggaagaagaagaagaagaagaa
gaagaagaagcggcagcagtagcagaagaggaatcagatgacaaatcttcttcttcttca
tcatcagaagaagaagatgaagaagaagaagaagaggaagaagacgatgattcgaagcga
gacagtatcaagaggctcctagagccgttcgtcaaagaccaactcatcgcaatcctcaaa
gaagccgcgtcgaaaaccccatcgatcatcgagcacataaccaagaccgtggacgccgac
ccaatccagcgcaaaatcttcgtccacggcctcgcttgggacaccgactccgaaacccta
gccgccgcgttcaaacccttcggcgcaatcgaggagtgcaaggtcgtcaccgacaaaatc
accaaccgatccaaaggctacggctttatcctcttcaaaaccagcgcctccgcccgcaaa
gccctcaagcaaccccagaagaaaatcggctccagaatggcggcctgccagctcgcctcc
tccggcggcaatcagtcccagcagcagcaccagcagccgccgtctcagcccgcccctgta
agcggccgcaggctttacgtggcgaatgtgggtcctcacattgctccagagaggctcagg
gccttttttgccgagtttggcgagctcgaagacgggccagtggcattaggtggattggat
aaagacacaggtaagttcaaaggattcgctatacttgtttacaagagtgtggagggagtc
aaaaaggcattggaagaacctgtgaagttcttccaaggtaacaaattgcaatgctctgtt
gccactgaaggccgcagtgttaataagaataataacagtaacagtaatagtaatagtaat
gatgccaagcccaataacgttgttgctactagtgttgctggtgttgctcctcctcttcct
gtggcagcatttaacccggcattggctggtcaagcttttaatcctggtcaagcttttaat
cctggccaagcttttaatccgggggcggtttttatggcccaaaatcctgctttaggggtt
ttgaatttgaaccatgttgggtttgggtttcctggtggcgtgtcgcagcccttgaacagg
gttggaaatgctcctaatcctatgggattgactcaactcagtgcaggctttggtgcacag
cctcctattaatagtataagcccttctgtgattggtagttatggcgctcaagctgctttg
caaggtttgggcgcgtatcagggttcacaaatggctcaatcttctgcagtaccgagaccc
caaactggtactggacccgttggaaccatgccatcttatttagggcgctag

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