Castanea sativa (European chestnut): 142607443
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Entry
142607443 CDS
T11266
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
csaa04812
]
142607443
Cytoskeleton proteins [BR:
csaa04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
142607443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Katanin_con80
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR41
WDR90_beta-prop_4th
eIF2A
Beta-prop_VPS8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
Beta-prop_RIG_1st
PROPPIN
Beta-prop_ACSF4
VPS8_N
PAN2_N
Nup188_N-subdom_III
Motif
Other DBs
NCBI-GeneID:
142607443
NCBI-ProteinID:
XP_075635057
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All DBs
Position
8:complement(56238701..56256295)
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AA seq
804 aa
AA seq
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MTTKRAYKLQEFVAHSSAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETTGVRCLTFNPDGR
TLLCGLHESLKVFSWEPIRSHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR
IEPYAISNVTRLNGHSESKSSSSGNLSVLNENTAKASLGRPAVSQNSDPLVKEAKSLGRL
SVSQNSDPIKEPKLLASTGSVPGTPQRISFNASPKAVPASSMAVPSGTAPKRNSTKAQST
TSVPVINKLDVIPVIVPRTNMRSEQAADSRKEVGLAARTMPFSLQSKATDFRKLSNSRDE
VDKQIVSVVPEFTGSKAAELSSGTDRNILPVAKSLTQGVSAEERSMKDDRFIGHSKHEMN
SMTESAASYQHASYDTRGHKLNRDACSIESQKAGRTRSLVVNWEKRERSPNYEEPTSSIP
PASVSTASMLPFNAFKHRGYSPSAEKETESASDEDAIADVMEQHDQFVSSMQSRSAKLQV
IYRYWERNDVKGVIGAMGKMADHAVVADVVSIMAQKIDTVTLDIFTCLLPLLTGLLESET
DRHLSISLDMLLKLVRIFGSVIYSTLSASSSVGVDIEAEQRLERCNQCFIELEKVKRCLL
SLTRRGGTVAKSAQELNLALQEVS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgactacaaaacgcgcctacaagctacaggaatttgtagcacattcttccgctgtgaat
tgcctcaagattggcaggaagtcgtccagggttctagtcaccggcggagaggatcacaag
gtcaatctttgggctattggcaaacccaacgccatcctgagtttgtctggacatacaagt
ggaattgattccgtaagctttgattcttcagaggtgttagttgctgcaggagccgctagt
ggtacaatcaagctttgggatttagaggaggcaaagattgttcgtacacttacgggtcac
agatccaattgcatatctgttgactttcatccctttggggagttctttgcatctggctct
ttggatacgaatctgaagatatgggatatcagaaagaaggggtgtatccacacatacaag
ggtcacactcgaggggtgaatgcaatcagatttaccccagatggccgttgggttgtatct
ggtggtgaggacaacactgtcaagttgtgggatctgaccgctggaaagctgttgcatgat
ttcaagtgtcatgaaggccaaattcagtgcatagactttcatccacatgagtttttgctg
gcaactggttcagcagacaggactgttaaattttgggaccttgaaacctttgagctcatt
ggttcagctggaccagagacaactggagttcgttgtttgacttttaatcctgatgggagg
accctactatgtggtttgcatgaaagtttgaaggttttctcatgggaaccaataagaagc
catgatgctgtggatgtgggatggtctagattgtcagatcttaatgttcatgagggaaag
cttcttggttgctcgtacaatcagagttgtgttggagtatgggttgtagatatctcgcgc
atagaaccatatgcaattagtaatgttacaagattaaatggccattcagaatctaaatct
tcttcaagtgggaatctgtcagtactaaatgagaacactgctaaggctagtttgggtcgg
ccagctgtttcacaaaattcagatcctttagtgaaggaagcaaaatctcttgggaggttg
tcagtttctcaaaattcagatcctattaaggaaccaaaacttttggcatccacaggaagt
gtacctggtactcctcagaggatcagttttaatgccagtccaaaagcagttcctgctagt
tctatggcagtccctagtggaacagctccaaaaaggaattccacaaaggctcagtcaact
accagtgttccagttattaacaaattggatgtgatacctgtaattgtcccaagaaccaat
atgaggtcagagcaagcagctgattcccgaaaggaagttggtctagctgcaagaacaatg
ccattttctttgcagtcaaaggcaactgatttccgaaaactatcaaatagcagagatgaa
gtggataaacaaattgtctcagttgtgcctgaatttacaggttctaaggctgctgaatta
agcagtgggacagataggaatatacttcctgttgctaaaagcttgactcaaggagtatct
gctgaagaaaggagcatgaaggatgatagatttattggacatagtaagcatgaaatgaat
tcaatgacagagtcagctgctagctatcagcatgcaagttatgatactcgggggcataag
ttgaacagagatgcatgctctattgaaagtcaaaaagcaggtagaacgcgttcacttgtt
gtgaattgggagaaaagggaaagatctcctaattatgaggaacctacctccagtattccc
cctgcttctgtctctacagctagcatgctccccttcaatgcgtttaaacacagaggatat
tctccgtctgctgagaaagaaacagagtctgctagtgatgaggatgctattgcagatgta
atggaacaacatgaccaatttgtcagctctatgcagtctcgttcagccaagttgcaggtg
atttatagatattgggaaaggaatgatgttaagggggttattggtgcaatggggaaaatg
gctgatcatgctgttgttgccgatgtagttagcattatggcacagaaaattgataccgtc
acgctggatattttcacgtgtcttctaccacttctcacaggccttcttgaaagtgagacg
gataggcatctaagcatctctttggacatgctgctaaagctggtcagaatatttggttca
gtcatctattcaaccttatcagcatcgtcatctgttggtgtagatattgaggccgagcaa
agactggagcggtgcaaccaatgctttatagagcttgaaaaagtcaaacgctgcctactg
tcccttaccagaagagggggaacagttgcaaagtcagcacaggagttaaacctagctttg
caggaagtttcatga
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integrated database retrieval system
