Castanea sativa (European chestnut): 142607459
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Entry
142607459 CDS
T11266
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142607459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csaa03041
]
142607459
Spliceosome [BR:
csaa03041
]
Complex B
Other components
Prp19-related factors
142607459
Complex C
142607459
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH_3
zf-CCCH
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
142607459
NCBI-ProteinID:
XP_075635081
LinkDB
All DBs
Position
8:30356833..30362049
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AA seq
511 aa
AA seq
DB search
MAHRMLRDLEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGR
DARFKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGLDYESSYGKVRANDTIMKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLNERVT
EQDLRDNFYAHGEIESIRMVPLRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKPESEGSDEARQQPAVAHSGMLPRAVISQQQSQLQPPGTLDQNQPMHYFNIPPPPQ
QERAFYPSMDPQRMGAVIPSHEGASTGPTGSGENKSGPEKQQQGHHYPYQGMPPPHGQYH
QQFYPPYGYMPPMPPYQQYPPPYHSAIPTPQPPPMNQPYQHSAPPGSGTHPGSAPSGSAT
HPGSTSGSAPPGSTQGGSGPSGSSTPGSSQQ
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatagaatgctcagagatctggaggccgatggctgggaacgctccgacttcccc
atcatctgcgagtcttgcctcggtgacaatccctatgttcgcatgacaaaagcagacttt
gataaggaatgcaagatttgtacacgaccctttacagttttcaggtggaggcctggtcgt
gatgccagatttaaaaaaactgaaatttgccagacatgcagtaagttgaaaaatgtttgc
caagtttgccttttggatcttgaatatggtttgccggttcaggttcgagacactgctctg
tcaatcaattctaatgatgccattcccaagagtgatgtgaatagggagtattttgccgag
gagcatgaccgcagggctagagctggtttagattatgaatcgtcatatggaaaggttcgc
gcaaatgacaccattatgaagcttcaaagaacaacgccgtattacaaaagaaatagagcg
catgtctgcagtttctacataaggggtgaatgcacaagaggtgcagagtgcccttacaga
catgagatgcccataactggggagttgtcacagcagaatatcaaagatcgttactacgga
gtgaacgatccggttgcaatgaagctactcaacaaggcaggagagatgccttctctggaa
cctcctgaggatgagagcattagaaccctctacgttggtgggcttaatgaaagggtcaca
gagcaggacctgagggataacttctatgctcatggtgaaattgaatccataaggatggtg
cccctacgagcttgtgcttttgtaacctacacaaccagagaaggtgcagagaaggctgca
gaagagctctccaacaaactggtcataaagggtctgaggctgaagctgatgtggggtaga
cctcaagcaccaaaaccagagtcagagggatcagatgaagcaaggcagcagcctgcagtg
gctcatagtgggatgttgcctcgggcagttatatcccagcagcagagccaattacagcca
cctggcactctggaccaaaaccaacctatgcattatttcaatattccacctccacctcag
caggagagagctttttatccatcaatggatcctcaaagaatgggtgccgttattccatca
catgagggggcttccactgggcccacagggtcaggtgagaacaaatctggtcctgagaag
cagcagcaaggccatcattatccctatcaaggtatgccaccaccacatgggcaatatcat
cagcagttctatcctccatatggatatatgccgccaatgccaccttatcagcaataccct
ccaccatatcattcagccatacccactccacagcctccaccaatgaaccagccttatcag
cattctgcaccaccagggtctggtacacacccaggatctgcaccatcaggatctgctact
cacccagggtctacatcaggatcggcaccaccagggtccacccagggagggtctggacca
tcaggatcctcaactcccgggtcatctcagcagtga
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