Castanea sativa (European chestnut): 142607460
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Entry
142607460 CDS
T11266
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csaa03021
]
142607460
03036 Chromosome and associated proteins [BR:
csaa03036
]
142607460
Transcription machinery [BR:
csaa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142607460
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
142607460
SLIK complex
142607460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
Chromo_MIT1
SWI2_SNF2
OAM_alpha
Motif
Other DBs
NCBI-GeneID:
142607460
NCBI-ProteinID:
XP_075635082
LinkDB
All DBs
Position
8:40117850..40146023
Genome browser
AA seq
1764 aa
AA seq
DB search
MAFFRNYTNETVSHSVLEEKGQEQSEDRMRSSVGNGDVDATSSDREFDINLDVQYQSEAE
AVGADRLQNEEAVNDVNTRTSNFQPTSRRMAMAGKWGSTFWKDCQPMTRGGSDSGQDSKS
GSEYRNAEGLEDNSSDGREDRLESEDDDRQKEAGKGHKVHSDVPADEMLSDEYYEQDGEE
QSDSMHYRGFHHSIGPNSRPQSKPVAISSHVKRNSRALNDNDADDDDNHDDADYDEEDEA
DEDDPDDADFEPDSGVTIGRTGNKHKDWDGEDSDEDDDSVDDIEGSDEDDSYYAKKPKGR
QQGKVGRNIRSIRDHKSYRASGRQRRMKSSFEEEESSAEDSDNDSDEAFKSMTRRGVNLR
KNGGRSTVSTNKSGRNSEVRTSSRSVRKVSYVESEESEELDEGKKKKGQKEEIEEEDGDC
IEKVLWHQPKGTAEDALRNNRSTEPVLWSHLYDTEPDWNEIEFLIKWKGQSHLHCQWKSF
SELQNLSGFKKVLNYTKKVMEDVRYRKAISREEIEVNDVSKEMDLDLIKQNSQVERIIAD
RISKDSSGNVIPEYLVKWQGLSYAEATWEKDVDIAFAQESIDEYKAREAAMAVQGKMVDF
QRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSV
SMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDLNVIVYVGTRASREVCQQYEFY
NEKVGRNIKFNAILTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTK
NKLLITGTPLQNSVEELWALLHFLDHEKFKSKDDFVQNYKNLSSFNENELANLHTELRPH
ILRRVIKDVEKSLPPKIERILRLEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVV
ELKKCCNHPFLFESADHGYGGDSRNDGSKLERIILSSGKLVILDKLLVRLHETKHRVLIF
SQMVRMLDILAEYMSLRGFQFQRLDGSTKSELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLEKKESKKGSFFDKNELSAILRFGAEELFKEDKNDEESKKKLLSM
DIDEILERAEKVEEKEPGGEQGNELLSAFKVANFGSAEDDGSFWSRWIKPEAVAHAEDAL
VPRAARNTKSYAEANQPEMSNKRKKKGSEPQERLQKRRRADYSVPAVPMIEGATFQVRRW
SYGNLSKRDALRFSRAVMKFGNQSQISFIAEEVGGAVGAAPPDAQIELFDALIDGCKEAV
EVEILDPKGPLLDFFGVPVKANDLITRVQELQLLAKRISRYEDPIAQFRVLMYLKPSNWS
KGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLMKKIAPVELQHHETFLPRAPNLRD
RANALLEMELAVLGKKANAKVGRKTSKKERENLLSTSISRGRAKKGKPGSPKLNVQMNKG
RPLKPMKLEPLVKEEGEMSDNEEVYEQFKEVKWMEWCEDVMVDEIKTLKRLQRLQTTSAD
LPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTMRLWNYVSTFSNLSGERLHQI
YSKLRQEQDEEGAVGPSHVNGSTHGPIGQDGDPNYFPPFPRQFERQRGFKNMSNYQMSEP
VVKGLDTGKFEAWKRRRRAETDNHIQVQPPALRPMSNGARVADPNSLGILGAGPSDNRHL
GGEKPFRMRQTGFPPRQGFSSGIK
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggccttttttaggaactatactaatgaaacagtttcacacagtgttctggaagaaaaa
gggcaggaacagagtgaagacaggatgaggagctcagtagggaatggggatgttgatgcg
acttcgagtgatagagaatttgatataaacctggacgtgcagtatcaaagtgaagctgaa
gcggttggtgctgataggctgcaaaatgaggaagctgttaatgatgttaatacgagaaca
tccaattttcaaccaacttcaaggagaatggctatggcaggaaaatggggttcaaccttt
tggaaggactgccaacctatgactcggggtggctctgattctgggcaggattctaaaagt
gggtccgagtatagaaatgcagaagggttggaagataattcatcagatggcagggaagat
agattagagtcagaagatgatgataggcaaaaggaagcgggcaagggtcacaaggtccac
tccgatgtccctgcggatgagatgttatctgatgaatactatgagcaggatggggaagag
cagagtgactcaatgcactatagagggtttcatcattccattgggccgaattctaggcca
caatcaaagcctgttgctattagtagccatgtgaaaaggaattctagagcattgaatgac
aatgatgcagatgatgacgacaatcatgatgatgctgattatgatgaagaggatgaggca
gatgaggatgaccctgatgatgcagactttgaacccgattctggtgtcacaattggtcgc
acagggaacaagcataaagattgggatggtgaagattctgatgaagatgatgacagcgtt
gatgatatagaaggttcagatgaagatgattcctattatgcgaagaaacctaagggtagg
caacaaggtaaagttggacgtaatataaggtcgattagagaccataaatcatatcgtgca
tctggtcgacaaaggagaatgaaatcatcatttgaagaggaagagtcctcggcagaggac
tctgacaatgacagtgatgaggcttttaaaagcatgacaaggagaggtgtaaatctccgt
aaaaatggtggccggtccactgtgtcaacaaataaatctggacgaaacagtgaggtccgt
acttctagtaggtcagttcgaaaggtatcatatgttgaaagtgaagaaagtgaagaactt
gatgaaggcaagaagaaaaagggtcaaaaggaggaaattgaagaagaggatggtgactgc
atcgagaaggttctgtggcatcagccaaagggcacggctgaagatgctctaaggaacaat
agatcaacggagcctgttctgtggagccacttgtatgatactgaaccagattggaatgag
attgaattcttgataaaatggaaaggccaatctcatttgcactgtcagtggaagtcattt
tctgagctacaaaatcttagtggttttaagaaagttttaaattacacgaaaaaagtgatg
gaggatgttagatacaggaaggcaatctcacgcgaagagattgaggtaaatgatgtgagc
aaggaaatggacttagatctcatcaagcaaaatagtcaggtggagagaattattgcagac
cgaatcagtaaagatagttctggcaatgtcataccagagtatttagttaagtggcaagga
ttgtcttatgctgaagcaacatgggagaaggatgttgatatcgcatttgctcaagaatcc
attgatgagtacaaggctcgtgaggctgcaatggctgtacaagggaaaatggtggatttc
cagcgcaagaagagcaaagcaagcttaaggaagcttgacgaacagcctgaatggttgaag
ggaggaaagcttcgtgattatcagcttgagggtttgaattttcttgttaacagttggagg
aatgatacaaatgtaatcttagctgatgaaatgggtcttgggaaaactgttcagtcagtt
tccatgcttggttttttacagaatgctcaacaaatccatgggccttttcttgttgttgta
ccattatctacgttgtcaaactgggcaaaagaatttagaaagtggcttcctgatttgaat
gttattgtatatgttggtacccgcgcaagccgagaggtttgtcagcaatatgaattttac
aatgaaaaagttgggcggaatataaaatttaatgcaatattgaccacatatgaagtagtt
ctgaaggataaggctgttctctcgaagatcaaatggaattatctgatggttgatgaagct
cataggttaaagaatagtgaggcacaattgtacacaaccctttcggaatttagcaccaag
aacaagttgcttatcactggaactcctttacaaaacagtgtagaagaactatgggctttg
cttcacttccttgaccatgagaagttcaagagtaaggatgattttgttcagaattacaag
aatctcagctcattcaatgagaatgagcttgctaatcttcatacggaattgaggccccat
attctccgaagagttataaaggatgtagagaagtctttgcctccaaaaattgagcgtatt
cttcggcttgaaatgtcccctcttcagaagcagtactacaagtggattttggaacgcaac
tttcatgacctgaacaaaggagttcgtgggaatcaggtttcacttttaaatattgtggta
gagttgaagaaatgctgtaatcatcctttcctgtttgaaagtgcggaccatggttatggt
ggggactcaagaaatgatggcagtaaactggagagaattatcttaagcagtgggaagcta
gtcatacttgataagctacttgttagattacatgagacaaagcatcgtgttctgattttt
tcccagatggtccgaatgctggatatactagcagagtatatgtcacttagaggttttcag
tttcagaggcttgatggtagtacaaagtctgagttacgccagcaggcaatggatcatttt
aatgctcctgggagtgatgatttctgcttccttctttcaactcgggcaggtggcctgggt
atcaaccttgcaacggctgacacagtaataatatttgattcagattggaatccccaaaat
gacttacaggcaatgagtagagctcatagaattggacaacaagaagttgttaacatctac
agatttgttacaagcaaaagtgttgaggaagatatcctggagcgagccaagaaaaaaatg
gttcttgaccatttggtgatccaaaaattaaacgcagagggcagattggagaagaaagaa
tcgaaaaaagggagtttctttgacaaaaatgagctatcggctatcttaaggtttggagca
gaggaactttttaaggaagacaagaatgatgaagaaagcaagaagaaacttttaagcatg
gatattgatgaaattcttgaaagagcagagaaagttgaagagaaggaacctggtggagag
caagggaatgaattgttgagtgcttttaaggttgccaatttcggtagtgctgaagatgat
gggagcttttggagtcgttggataaagccagaagcagtagcccacgctgaagatgctcta
gttcctcgtgctgcaagaaataccaaaagctatgcagaggctaaccaacctgagatgagt
aataaaaggaaaaagaaaggatctgagcctcaggagagattgcagaaacgacgtagagct
gattattcagtgccagcagtaccaatgatcgagggagctacttttcaagtgagaagatgg
tcttatgggaatttgtctaaaagagatgcattgcgtttttctcgtgcggtcatgaaattt
ggaaatcagagccaaatcagcttcatagctgaggaggttgggggtgcagttggagcagct
ccacccgacgcacagattgaactctttgatgctttgattgatggatgtaaagaagcagtt
gaagtagaaatcctggacccaaaggggcctttgttggatttctttggtgttcctgtgaag
gctaatgatcttatcactcgtgttcaagagctgcaactcctagcgaagcgcattagtcgc
tatgaagatcccattgcccaattccgggttttgatgtacctcaaaccttcaaactggtcc
aaaggttgtggctggaatcagattgatgatgcaagattgcttctgggaatacactaccat
ggttttggcaattgggaaaagataaggttagatgaaaggcttggccttatgaagaagatt
gctccggtggaacttcaacaccatgaaacctttttaccacgtgctccaaatttgagagac
cgtgctaatgctcttctagaaatggaacttgcggttcttggaaagaaagcaaatgctaaa
gtgggtcgtaaaacttctaagaaggagagggaaaatcttctgagcacctcaatctctcgt
ggccgggctaagaaaggaaagcctggatctcccaaactcaatgttcaaatgaacaaagga
agacctttgaaacccatgaaacttgaacctttagtaaaagaggagggtgaaatgtcggac
aatgaagaagtatatgagcagttcaaggaagtgaaatggatggaatggtgtgaagatgtc
atggttgatgaaataaaaaccctgaaacgtcttcagaggttgcagaccactagtgctgat
ctcccaaaggaaaaggtgctttcaaaaattcggaattacttgcagcttctaggccgaagg
attgatcaaattgttttagaacatgaggaggagccgtataaacaagataggatgaccatg
cgactttggaactatgtctctaccttttcaaatctctccggtgagaggcttcatcaaatt
tactcaaaacttagacaggagcaggatgaggagggagcggttggcccttcccatgttaat
ggatccacacatggtcctattggccaagacggtgaccccaattattttcctcctttccct
cggcaatttgagaggcaaagagggttcaaaaatatgagtaactatcaaatgtcagaacca
gttgtcaagggtcttgatacagggaaatttgaagcatggaaacgaaggagaagagcagaa
actgataatcatatccaagttcagcccccagctctaagacctatgagtaatggtgctcgg
gtagctgatccaaattcattggggattcttggggctggaccatctgacaacagacatttg
ggtggtgagaagccttttaggatgcgtcagactggtttccctccgaggcaaggtttctca
tctggtatcaagtag
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integrated database retrieval system
