Castanea sativa (European chestnut): 142607498
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Entry
142607498 CDS
T11266
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csaa04131
]
142607498
04121 Ubiquitin system [BR:
csaa04121
]
142607498
Enzymes [BR:
csaa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
142607498
Membrane trafficking [BR:
csaa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
142607498
Ubiquitin system [BR:
csaa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
142607498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
Zf_IFT144_1st
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
Zn_ribbon_IFT122
HypA
Gp53-like_C
Motif
Other DBs
NCBI-GeneID:
142607498
NCBI-ProteinID:
XP_075635131
LinkDB
All DBs
Position
8:complement(49216367..49219030)
Genome browser
AA seq
386 aa
AA seq
DB search
MEETMAARYWCHRCSQMVNPVMETGIKCPFCQDDFIEEMSSTAGDNQDPETEFGSDRALS
LWAPILLGMMGNPRRRGRTRRFEFEEDEEEDNNDDNGESRHGGEADAERQLESIIRRRRR
SSATILQLLQGIRAGMQSEMSENSEGDRDNRDRDRERERERERERVILINPFNQTVIVQG
SFDSNRGQGENQSSIGSLGDYFIGPGLDLLLQHLAENDPNRYGTPPAQKEAIEALPTVTI
KDNLQCSVCLDDFEMGAEAKQMPCKHKFHSGCILPWLELHSSCPVCRFQLPADEAKRDSD
DGSRNSTNTPRESSESNESSQVSGEEGEGDGDGRSGNTRRFSFPWPFPSFFSSSTSQSGG
GNSSSTPSSSSANATGSGNASQTDEN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaacaatggcagcaaggtattggtgtcacaggtgttcacaaatggtgaatcct
gttatggaaactggtatcaaatgtcccttttgccaagatgattttattgaagaaatgagc
agcactgctggggataaccaagaccctgaaacagaatttggatctgaccgtgccctttct
ttatgggcccctatcttgctcggcatgatgggcaatcctcgccgccgagggcggactaga
cgttttgaattcgaggaggacgaggaggaggataacaatgatgataatggcgagtcacgc
catgggggtgaggctgatgcggagcgtcaattggaatccattattaggaggaggagaaga
agctcagctactatactacaattgctccaaggcattcgagctggaatgcaatccgaaatg
tctgagaattcggagggtgatagggataatagggatagggatagagagagggaaagagaa
agagaaagagaacgcgtaattttgatcaacccttttaatcaaactgtgattgttcaaggt
tcttttgattcaaaccggggtcaaggtgagaatcagagctccattgggtcgctaggtgat
tacttcattggtcctggtttagatttattgctgcagcatttggctgagaatgaccccaat
agatatgggacaccaccggcacaaaaggaggccattgaagcattgcctactgtgacaatt
aaggataatttgcagtgttcagtgtgtttagatgattttgagatgggtgctgaagcaaag
cagatgccttgtaagcataaatttcatagtgggtgtattctgccttggcttgagcttcat
agttcttgtccagtatgtaggttccagctgcctgctgatgaggcaaagcgtgattcagat
gatgggtctagaaacagtactaataccccaagagagagtagtgagagcaatgagagcagt
caagttagtggcgaagaaggagaaggagatggagatgggagaagtggaaatacaagaagg
ttttcatttccatggccatttcctagttttttttcatcttcaacatctcaatctggtgga
ggtaattcttcctcaacaccgtcatcttcgtcagctaatgcaactggaagtgggaatgca
tctcaaacagatgagaattga
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