Castanea sativa (European chestnut): 142607709
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Entry
142607709 CDS
T11266
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142607709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142607709
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142607709
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142607709
mRNA degradation factors
3'-5' decay
Ski complex
142607709
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
142607709
NCBI-ProteinID:
XP_075635420
LinkDB
All DBs
Position
8:complement(30336849..30351798)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDRIEAANELSFRVGFSGHSGHLRVEPISTVEHPDPVNSLPDFILPPAFPRETPDSIKTY
VEETYLSPRLDPEEFSPEKVGRQWDFDWFGRAKVPLEPSLPRSIVVPTWELPFRRQKKGS
MQEIWEPKSVQVDVSELIVGAQDSLPRTAGPAKDFLRGSINNRPFRPGGLDESQSLERIH
PEGASNGEWVREVLNGGPAQTVTPSLKKGMDLGNLKVYPSSWNVYKDQSSIKSTSDEKLG
ELSVQFDDLFMKAWEDDVVPEYEGDGPLSEAESVKLEDESNKTDVSSSPNEPELSLLDDI
FSVESGGSTTKLDGISDGGGQQKQQAWAVIGGGEGIAERFHELVPDMALDFPFELDKFQK
EAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGK
FDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVW
EEVIIMLPRHINFVLLSATVPNTVEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGEL
YKICENEKFMPQGFKNAKDAFKKKNLTGVGGGTGSYVGVPAAIDGRAQRREHSNRGKQNK
HSGSQNLGNFTGTVGGNRNYGNSQNNWGSRRSDANLWLQLINNLSKKSLLPVVIFCFSKN
RCDKSADSMYGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLHRGIGVHHA
GLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEY
TQMAGRAGRRGLDKIGTVVVMCRDEILEESDLKHVIVGSATRLESQFRLTYIMILHLLRV
EELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECIKGEPAIEEYYEMYSDAE
KDGSSISEQVMQSPAAQQFLSPGRVVVVKSTSAQDHLLGVVVKAPSANNKQYIVLVLKPN
LPVTAQSSQASSNSQDKRNVDFPDGYFMVPKAKRALEEDYCSSVTPRKGSGVINIKLPHC
GAAAGVSYEVRGVDVTGFLCICNCKIKIDQARLLEDSSSVAYSRTVQQLLELKSDGNKYP
PALDPKKELKLKDMNLVEDYNRWTDLLEKMSKNKCHGCIKLEEHIKLAKEIKRHKEEVNA
LKFQMSDEALQQMPDFQGRIDVLKDIGCIDADLVVQIKGRVACEMNSGEELICTECLFEN
QLDDLEPEEAVALMSAFVFQQKNTSEPSLTPKLSQAKKRLYDTAIRLGELQAQFKVQINP
EEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIM
GNSALYKKMEIASNAIKRDIVFAASLYITGV
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatcgaagcagcaaacgagctctctttccgggtcgggttttccggccacagt
ggccatctcagggtggagccaatctccaccgtcgagcaccccgaccccgtcaattctctt
cccgatttcattctgccacctgcatttccgagggaaacacctgattcgattaaaacgtat
gtagaagagacatatctatcacctagattagaccctgaagaattttcacctgaaaaggtt
ggaaggcagtgggattttgattggtttggaagggcaaaagtgcccctagagccatcatta
ccacgctctattgtggttcctacatgggaattgccatttagacgccagaagaaagggtcg
atgcaagaaatatgggaacccaagtctgttcaggtggatgtatcagaattaattgttggt
gctcaagactctttgccacgcacagctggacctgcaaaggattttctaaggggcagcata
aataatcgcccttttcgtcctggaggtttggatgagtcccagtctttagaaaggattcat
cctgaaggtgcttcaaatggtgaatgggtacgtgaagttttgaatggtggccctgctcag
accgttactccaagcttgaagaaagggatggaccttggcaatctcaaggtttatccatcc
tcatggaatgtttacaaggaccaaagttcgatcaagagcacatcagatgaaaagctgggt
gagttatctgtacagtttgatgacttgttcatgaaggcttgggaagacgatgttgttcct
gaatatgagggagatggtccattgtcggaggcagagtctgttaaattggaagatgaatca
aataagactgatgtgtccagcagcccaaatgagcctgaattatctctattagatgatatc
ttttcagttgaatcaggaggatcaacgacaaaattggatggcataagtgatggtggtgga
cagcagaagcagcaggcctgggctgttattggaggtggtgaagggattgcagagcgcttc
catgaacttgttcctgatatggcattagattttccctttgaattggataaattccagaaa
gaggctatatattatcttgaaaggggagagtctgtttttgtggctgctcatacatcagct
ggaaagacggtcgttgcagaatatgcgtttgctttggcatcaaaacattgcacaagagct
gtatataccgctcctattaaaaccatcagcaatcaaaaatatagggatttctgtgggaaa
tttgatgttggacttctcactggtgatgttagcttgaggccagaggcttcgtgtctcatc
atgaccactgaaatattgaggtcaatgctttaccggggtgcagatattatacgtgacatt
gaatgggttatatttgatgaggtgcattatgtcaatgatgttgaaagaggtgttgtttgg
gaagaagttataatcatgcttccaagacatattaactttgttctcctttcggccacggta
ccaaacacggttgagtttgctgactggattgggcggacaaagcaaaaggaaatccgcgta
actgggactacgaaaagaccagtaccactggagcactgcctattttattctggagaactt
tacaaaatatgtgaaaatgaaaaatttatgcctcagggatttaaaaatgccaaagatgca
ttcaagaaaaagaatttgactggtgttggtggtggtactggatcttatgttggggtccca
gctgctattgatggccgagctcagagacgcgaacattctaatcgtggcaagcagaataag
cattctgggagccaaaatctggggaactttacagggactgttggggggaatcgaaactat
gggaacagccaaaataactgggggtcaaggagatcagatgctaatctgtggttgcagctt
attaacaatctatcaaagaaatctctattgcctgtggttatattttgtttctcaaagaat
cgctgtgataaatcagctgatagcatgtatggaactgacctaactagtagttctgagaaa
agtgagattcgtgttttctgtgacaaagcattttcccgactaaagggatctgacaggaat
ttaccacagattgttagagttcaaagcctacttcacagagggattggtgtccatcatgca
gggctgcttccaattgtcaaggaagtagttgagatgcttttctgccgtggtgtaatcaag
gttctattttcaacggagacatttgcaatgggggtcaatgctccagctagaacggttgtt
tttgatactttaaggaagtttgatggcaaggaatttagacaattattgccaggagaatat
actcaaatggcaggccgtgctggcagaagaggacttgataaaattggtacagtggttgtt
atgtgtcgtgatgaaatcttagaagagagtgatttgaagcatgttatagttggaagtgca
actaggcttgagtctcagtttcggctgacctatatcatgattctacatcttctccgtgtt
gaagaattgaaggtggaagacatgctgaaaagaagttttgctgaattccatgctcagaag
aagcttccagagcaacaacaacttctaatgcgaaagcttgctcaacccacaaaagctatt
gaatgtataaaaggtgaaccggccattgaggaatactatgagatgtactcagatgctgag
aaagatggcagttcaatatctgaacaagtaatgcagtcacctgctgctcaacaatttctt
tctcctggaagagtggtagttgtgaaatctacatcggcccaggaccacttgcttggagtt
gttgtgaaagcaccttctgctaataacaaacaatacattgttttagtgctgaaacctaat
ttaccagtaactgcacaaagttcccaggctagcagtaattcacaagataaaagaaatgtc
gattttccagatggttattttatggtaccaaaagcaaaacgtgcccttgaggaagactat
tgttcttctgtcactcctcgcaaaggatctggagtcatcaacataaaattacctcactgt
ggtgctgctgctggggtgagttatgaggttcgaggagttgatgtcacagggtttttatgc
atatgtaattgcaaaataaaaattgaccaagctcgacttcttgaagatagtagtagtgtt
gcttactccaggacagttcaacagctattggaactgaaatctgatggaaataagtaccct
ccagccctagatccaaagaaagagctaaagttgaaagacatgaatcttgtggaagattac
aacaggtggactgacctgttggaaaagatgtcaaagaataagtgccatgggtgtataaaa
ttggaagagcacattaagctagcaaaagagataaagagacacaaagaggaagtcaatgct
ctaaaatttcaaatgtcagacgaagcacttcagcagatgccagactttcagggtcgaata
gatgttctgaaagatattggatgtatagatgctgaccttgtagttcaaataaaaggccgt
gttgcttgtgagatgaactcaggggaggagttgatttgcacagagtgtttatttgagaat
cagctagatgatctggaaccagaagaagcagtggcattaatgtcagcctttgtgtttcag
cagaagaatacttctgagccttctcttactcccaagctgtctcaggccaaaaagagatta
tatgacacagcaataagacttggggagcttcaagcccagttcaaagtacagattaaccct
gaagagtatgccagagacaatctcaagtttggtcttgtagaagtggtttatgaatgggca
aagggcactccatttgcagatatctgtgaactcacagatgttcctgaaggcctgatagtg
cgcaccattgtaagactggatgagacatgtcgtgaatttaaaaatgctgcagctattatg
ggtaattctgcactctacaagaaaatggaaattgcttccaatgcaataaagcgagacatt
gttttcgcagctagcttgtacatcactggagtgtaa
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