Castanea sativa (European chestnut): 142607953
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Entry
142607953 CDS
T11266
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142607953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142607953
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142607953
mRNA degradation factors
5'-3' decay
Decapping complex
142607953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
142607953
NCBI-ProteinID:
XP_075635756
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Position
8:46124852..46133957
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AA seq
367 aa
AA seq
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MAQQSGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVE
GSLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQAPYLLYRNASQEVNGIWFYN
ARECEDVANLFNRILNAYSKVPQKSKVSSNKSEFEELEAVPTLAVMDGPLEPSSSTVSNV
TDVPDDPSFVNFFSAAMTIGNSSNAAISGQAYQFPPMVPPPSRPVSVAAPTMPTLQIPSP
PLSSSIPLMPHLDTPESNSNSNLNTNLVKPSSFSVPPSSSAIMIPLVSSSMPSAPPLHNL
QRPYGAPLLQPFPPPTPPPSLAPPPIPTPNYGPVINRDKVRDALLVLVQDNQFIDMVYRA
LLNAHHS
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atggcacagcagagtgggaagctaatgccaaatctggaccaacagagcacgaagctcctc
aacctcaccgtcctccagcgaatcgatcccttcgtcgaggagatcctcatcactgctgct
cacgttaccttctacgagttcaacatcgaccttagccaatggagccgcaaggacgtcgag
ggatctctctttgtcgtcaagaggaatacgcaacctcggtttcagttcattgtgatgaac
cggcgtaatacggataatttggtggagaatctattgggagatttcgagtatgaagtccag
gctccatatttattatatcgaaatgcctcccaagaagtgaatggcatttggttttacaat
gcacgcgaatgtgaagacgttgcaaatctgtttaacaggatacttaatgcatactccaag
gttcctcaaaagtcaaaggtgtcttccaacaaaagtgagttcgaggaactcgaagcagtc
ccaactttggcagttatggacggtcctctagagccatcatcatcaactgtctccaatgtc
acagatgttcctgatgatccttcctttgtgaacttcttcagtgcagctatgactattggt
aattcttcaaatgctgcaatatctggacaagcttaccagttccctccaatggtccctcca
ccttcccgtcctgtcagtgttgctgctccaaccatgcccaccttgcaaataccatcccct
cctttgtcatcatctattcctttaatgccccaccttgatactcctgaatccaacagcaac
agcaacctgaacactaatcttgtaaagccttcttcattttctgttcctccttcctcctct
gcaataatgatcccacttgtctcttcatccatgccttctgctcctccacttcacaaccta
caacgcccctatggtgcaccgttgttacaaccttttccacctcccactcctccaccatct
ctcgctcctcctcccattccaactccaaactatggaccagttataaaccgagataaagta
agagatgcacttttggtgcttgttcaggacaatcaattcattgacatggtgtatcgagct
cttttgaatgcacaccactcataa
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