KEGG   Castanea sativa (European chestnut): 142608223
Entry
142608223         CDS       T11266                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03030  DNA replication
csaa03410  Base excision repair
csaa03420  Nucleotide excision repair
csaa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    142608223
   03410 Base excision repair
    142608223
   03420 Nucleotide excision repair
    142608223
   03430 Mismatch repair
    142608223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:csaa03032]
    142608223
   03400 DNA repair and recombination proteins [BR:csaa03400]
    142608223
Enzymes [BR:csaa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     142608223
    6.5.1.6  DNA ligase (ATP or NAD+)
     142608223
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     142608223
DNA replication proteins [BR:csaa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    142608223
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     142608223
DNA repair and recombination proteins [BR:csaa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     142608223
   NER (nucleotide excision repair)
    Other NER factors
     142608223
   MMR (mismatch excision repair)
    Other MMR factors
     142608223
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 142608223
NCBI-ProteinID: XP_075636069
LinkDB
Position
8:complement(42643085..42655971)
AA seq 793 aa
MLLLPPPYTLTLTXSLSLSRSRSALKTLSSFLVSTKPFSSKNPSLTMSKPPSAFDALMSN
ARAAASKKKPQSSSPNKRKTLDSNPPQNPKTAKIPNSSPPGNAVSDAKPEESSETKQVKE
NGSCVQDPNLTGLEKKTKVIGVEERVAQLKSKMPELKEKKAGDFDPRSVAIWGEGERVPF
MFLCLVFDMISNESGRILTTDIVCNMLRTVMVTTPDDLVPIVYLSANRIAPAHEGTELGI
GDASIIKALAEAFGRTEVQVKKQYQVLGDLGLVAKASRSSQSMMRKPDALTVTKVFNTFQ
LIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQAKLRIGLAEQTLLAALGQAAVH
TQKDSTPPPNIQSPIQEAMKIVKQAYSLLPVYDKIVPALLSGGVWNLPKTCNFTPGVPVG
PMLAKPTKTVQEIVRKFQDSEFTCEYKYDGERAQIHYMDNGLVEIYSRNAERNTGKFPDV
VITVSRLKKSSVRSFVLDCELVAYNREKQIILPFQTLSTRARKNVDVSDIKVDVCIFAFD
MLYLNGQPLLQEELKVRREHLYGSFEEEAGFFQFATAITSNDLDEIQKFQDSAVNASCEG
LIIKTLTKDATYEPAKRSLNWLKLKKDYMDNLGDSLDLVPIAAFYGRGKRTGFYGAFLLA
CYDSNNEEFQSICKIGTGFSEEVLEKCSTNLASKVIPEPKSYYRYADSMNPDVWFEPAEV
WEVKAADLTISPVHRAAVGIVDPDKGISLRFPRLMRVREDKKPEESTSSEQVAEMYNSQK
HNHPNDQDDDEDD
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgctactactaccaccaccctacactctcactctcactnnctcactctcactctctcgc
tctcgctcagctctcaaaacactctcttcctttctcgtctccacaaaacccttctcttcc
aaaaaccctagcctcacaatgtcgaagcccccttccgctttcgacgcactcatgtccaac
gcacgcgccgccgcctccaagaaaaagccccaatcttcttctcccaacaagcgcaaaacc
ctagattccaaccctccccaaaaccccaaaaccgccaaaatccccaattcttcgccgcct
ggtaacgccgtttccgacgcgaaacccgaagagtctagcgagaccaagcaggttaaagag
aatggaagctgtgttcaagatcctaatttgactgggttggagaagaagacgaaggtgatc
ggcgtggaggagagggttgcgcaattgaagagcaaaatgccggaattgaaggagaagaaa
gcaggggattttgatccgagatcggtggcgatttggggcgagggcgagcgtgttccgttc
atgtttctttgtttggttttcgacatgatttcgaacgagtcggggcggattttgactacg
gatattgtgtgtaatatgctgaggactgtgatggttacaaccccagatgatcttgtgccg
attgtgtatctttcggccaataggattgccccggcgcatgaggggacggagcttggaatt
ggggatgcttccatcattaaggcgcttgccgaggcttttgggaggactgaggtgcaggtt
aaaaagcaataccaggttttgggagacctgggtcttgttgcgaaagcaagccgttcatct
caatctatgatgcgcaagcctgatgccttaactgttaccaaggtttttaatacattccag
ctcattgctaaggaatctgggaaggatagtcaagagaagaaaaaaaaccatatcaaggga
ctacttgttgctgccaccgattgtgagcctcaatatctaattcgtctacttcaggcaaag
ttgcgtattggattggcagagcagactcttttagctgcattgggtcaagctgctgtacat
acccaaaaagattctacaccacctccaaacatccagtctcctatacaagaggctatgaag
attgttaaacaagcatactctctacttcctgtctatgataaaatagtccctgcgcttctt
agtggtggtgtgtggaatctcccaaaaacatgtaactttacacctggtgttccagttgga
cctatgctagcaaagccaactaaaacggtacaggagattgtacgtaaatttcaggattct
gagtttacctgtgaatataagtatgatggagaacgtgcccagatacattacatggataat
ggtttggttgagatatatagtcgaaatgctgaacggaacactggaaagtttcctgatgtt
gtcattacagtttcaaggttaaagaagtcatctgttagatcatttgttctggattgtgaa
cttgttgcttataaccgtgaaaaacagattattcttcccttccagaccctcagcactcga
gctcgtaaaaatgtggatgtgagtgatatcaaggttgatgtttgcatatttgcttttgat
atgttatatcttaatggccaaccgcttcttcaggaggaacttaaagttcgtagggagcat
ctatatggctcttttgaggaagaagctggatttttccagtttgcaactgcaataacatca
aatgatttagatgaaatacagaaatttcaagacagtgcggttaatgcaagttgtgagggt
ttaattatcaaaacattgactaaagatgctacatacgagcctgcaaagcggtcacttaac
tggctaaaattgaagaaagattacatggataatttaggggactcactagatttggtacct
attgctgctttctatggccgtgggaagcgtacaggtttctatggtgcctttctccttgct
tgttatgacagcaataatgaagaatttcaaagcatttgtaaaataggcactgggttttct
gaagaagtgcttgaaaaatgttctaccaatctcgcttctaaagtgattcctgaaccaaag
tcgtactaccggtatgcagattcaatgaatccagatgtatggtttgaacctgctgaggtc
tgggaggtgaaagctgcagacttgactattagccctgttcatcgtgctgcagttggcata
gtggatccagataagggcatttctcttcgatttcctcggctgatgcgtgtccgtgaagat
aagaaaccagaggagtccacatcgtccgagcaggtggctgagatgtataattctcaaaag
cacaatcatccgaacgatcaagatgatgatgaagatgattga

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