Castanea sativa (European chestnut): 142609228
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Entry
142609228 CDS
T11266
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142609228
09122 Translation
03013 Nucleocytoplasmic transport
142609228
03015 mRNA surveillance pathway
142609228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142609228
03041 Spliceosome [BR:
csaa03041
]
142609228
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142609228
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142609228
Spliceosome [BR:
csaa03041
]
Complex C
Other components
EJC/TREX
142609228
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142609228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
142609228
NCBI-ProteinID:
XP_075636942
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All DBs
Position
1:21995043..22001679
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AA seq
428 aa
AA seq
DB search
MGETRENDGYEEELVDYDDEEANAPASVATKVNGETVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSAIV
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVHIKVHKDLLKNECPHIVVGTPGRILA
LARERDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQEPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLKECNFPSICIHSGMSQEERLTRYKGFKEGQSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNNVQMRFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaccagggagaacgatggttacgaagaagagcttgttgattacgatgatgaa
gaagccaatgccccggcctccgtcgcaaccaaagtcaacggcgaaacagtcaagaagggc
tatgttggaattcacagttcaggattcagagactttcttttgaagccagagcttcttcga
gctattgtggactcgggatttgagcatccttctgaagtgcaacatgaatgtatccctcaa
gctattctgggtatggatgtcatttgtcaagctaagtccggaatgggaaaaactgctgtt
tttgttctttcaacattgcagcagattgaacctgttgccggccaagtttctgcaattgtt
ctgtgtcatacaagggagttagcataccagatttgtcatgagtttgagagattcagcaca
tacttgcctgatctaaaggttgctgtcttctacggtggtgtccacatcaaagttcacaag
gatttgctgaaaaatgaatgccctcatattgttgttggaacgcctggaagaatattggca
ctggcaagagagagggacctttctttgaagaacgtgaggcattttattctggatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatcttcaagatgact
cctcatgataaacaagtaatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaagagatttatgcaagaaccaatggaaatttatgttgacgacgaggccaagttgacc
ctgcatggtcttgttcagcactacatcaaattgagcgagtcagagaaaaaccgcaagttg
aatgacctccttgatgcactggacttcaatcaagttgttatctttgtcaaaagtgttaat
agagcggctgaactgaacaaactactgaaggagtgcaattttccctccatatgcatccat
tctgggatgtcccaggaggaaaggttgacgcgctacaaaggttttaaggaagggcagtca
aggattcttgtagccactgatttggttggtagggggatagacattgaacgggttaacatt
gtcatcaattatgacatgccagattcagcagacacttatctgcacagggttggtagagct
ggtaggttcggcaccaaagggcttgcaattacatttgtttcatctgcttctgattcggag
gttctcaataatgttcagatgaggtttgaggtggatataaaagaacttcctgaacagatt
gatacctctacatacatgccatcatag
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