Castanea sativa (European chestnut): 142609352
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Entry
142609352 CDS
T11266
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa00040
Pentose and glucuronate interconversions
csaa01100
Metabolic pathways
Module
csaa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
142609352
Enzymes [BR:
csaa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
142609352
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
142609352
NCBI-ProteinID:
XP_075637041
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Position
9:29336418..29340296
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AA seq
434 aa
AA seq
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MAQQIRYLLPFFVFMLSFISCYSTLQKDPLRHFGEESGFKNVIKQSTHVLRLKRFDRILG
TISTSGKTINVNDYGAKGDGTDDTEAFKKAWEVACSTQGAVLVVPQKTYRLKPIRFLGPC
KSDLKVQISGTLEASNVRSDYSQDGRHWLLFDSVQNLIVEGGGTINGNGKIWWQNSCKVN
KALPCTVAPTALTFFECKYLTVNNLKIRDAQQIHTSFEKCMNIQVSLLTITAPEDSPNTD
GIHVADTQDIQISSCNIGTGDDCISIASGSQNVQARDITCGPGHGISIGSLGSGNSESYV
SGVTINGAKLYGTTNGVRIKTWKGGSGSASNIKFQNVEMHNVANPIIIDQNYCDQDKPCS
DQKSAVQVKNVLYQNIYGTSASDVAIEFNCSNSFPCQKILLQSINLEAEKGKKTEALCNN
VKSTDTGIVSPHCP
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcccagcaaataagatatcttcttccatttttcgttttcatgctctctttcatttca
tgttatagcactttgcaaaaggacccacttcgtcattttggtgaagaatctgggtttaag
aacgtgatcaagcaaagcactcatgtcttacgtttgaaaaggtttgatagaatattgggt
accatttctacctcgggtaaaacaattaatgtcaatgactatggagctaaaggtgatggt
actgatgacacagaggcatttaagaaggcttgggaggtagcttgttcaacccaaggagct
gttctcgtggtgcctcagaaaacctatcgtcttaagccaattagattcttaggtccttgt
aaatctgatcttaaagtgcagatttctggaaccttggaagcatctaatgttcgatcggac
tacagccaagatggtagacactggctactctttgatagtgttcaaaatttaatagttgaa
ggtggtggaaccatcaatggcaacgggaagatatggtggcaaaactcttgcaaagtcaat
aaagctctgccttgcacggtcgcaccaacggctctaaccttcttcgagtgtaagtatttg
accgtgaataatttgaagatccgagatgcgcaacaaattcacacctctttcgaaaaatgc
atgaatattcaagtttctttgttgactataactgctccagaggatagccccaacactgat
ggaattcatgtcgctgacactcaagacatccaaatttcaagctgtaatataggaacaggt
gatgattgtatttcaattgcaagtgggtcccagaacgtgcaagccagagacataacctgt
ggaccgggtcatggaattagtattggaagcttaggatctggaaattcggaatcttatgtt
tctggtgtaaccattaatggagctaagttgtatggaaccacaaatggtgttagaattaag
acatggaagggagggtcaggaagtgcaagcaacatcaaatttcagaatgttgaaatgcat
aatgttgccaatcctataataatagaccaaaattactgtgaccaagacaaaccatgcagc
gatcagaaatctgcagttcaggtgaaaaatgtgctttaccaaaacatttatgggactagc
gcttctgatgttgccattgaattcaactgcagcaatagctttccatgtcagaagattttg
ttgcaaagcattaacttggaagctgaaaaagggaaaaaaaccgaagctttatgcaacaat
gtgaaatcgactgacacaggaattgtttccccgcactgcccatga
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