Castanea sativa (European chestnut): 142609439
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Entry
142609439 CDS
T11266
Name
(RefSeq) putative CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142609439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142609439
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142609439
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142609439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
142609439
NCBI-ProteinID:
XP_075637139
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All DBs
Position
9:12008350..12009579
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AA seq
288 aa
AA seq
DB search
MCFAKPEIQPHRPVVIRSVWSHNLESEFGLIRSVIDSYPLIAMDTEFPGIVVRTPNNGSD
PDDGPGFQLRQPDRHYVVLKANVDRLNLIQIGLTLSDSEGNLPDLGTDELYIWEFNFNDF
DVARDAHAHDSVELLRRQGIDFERNREFGVESTRFAELMMSSGLVCNDLVEWVTFHSAYD
FGYLVKVLTQRVLPSELREFLELVRVFFGARVYDVKHLMRYCASLYGGLDRVSQALNVGR
VIGKSHQAGSDSLLTLHAFQKITKDYFGKVNPIEKYAGVLYGLDISDL
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgtgttttgcgaaaccagagattcagcctcatagacccgtggtgataagatcggtatgg
tcgcataatctcgaatcggagttcggtctgatccgatccgttatagattcgtacccgttg
atcgcgatggatacggagtttcccggaatcgtcgttcgaacgccgaataacgggtcggat
cccgacgacgggccgggttttcagctccggcagccggaccggcactacgtggtgctgaag
gcgaacgtggaccggttgaacctgatacagatcgggctcacgctgtcggattcggagggg
aatttgccggatctagggaccgacgagctttacatatgggagttcaacttcaacgacttc
gacgtggcgcgtgacgcccacgcgcacgactcggtcgagttgctgaggcgccaggggatc
gacttcgagcgcaaccgcgagttcggcgttgagtcgacccggttcgccgagttgatgatg
tcgtcggggctcgtgtgcaacgacctcgtcgagtgggtcaccttccacagcgcgtacgac
ttcggatacctggtcaaggtgctgactcagcgagtcttgccgagcgagttgcgcgagttt
ctcgaactcgtccgagtcttctttggtgctagggtttacgatgtgaaacacttgatgcgg
tactgtgcgagtctctacggtgggctggaccgggtctcccaggcccttaatgtgggtcgg
gtcatcgggaagagtcaccaggccgggtcggatagtttgctgaccctgcacgcgtttcag
aagatcaccaaagattacttcggcaaagttaatccgattgaaaagtatgctggtgttctg
tatggattagatatttccgatctttag
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