KEGG   Castanea sativa (European chestnut): 142609678
Entry
142609678         CDS       T11266                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142609678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142609678
   03041 Spliceosome [BR:csaa03041]
    142609678
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     142609678
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     142609678
Spliceosome [BR:csaa03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    142609678
SSDB
Motif
Pfam: RRM_1 RRM_7 BSP_II
Other DBs
NCBI-GeneID: 142609678
NCBI-ProteinID: XP_075637447
LinkDB
Position
9:complement(33330759..33334194)
AA seq 506 aa
MARKRKLDSQTQSGEPTTEPPQKQQQQQQQQQQQLQQQENVEYEEVEEEVEEEVEEEEEE
EEDEDDDDDEEQQQQLQNAANQTANSTSTSASAGADGEDDDDDDEPIQNLLEPFSKDQII
NLLREAADKHRDVADRIRKVADEDPAHRKIFVHGLGWDTTAETLTSVFKQFGEIEDCKAV
CDKISGKSKGYGFILFKSRRGARNALKQPQKKIGNRMTACQLASIGPVPMGNSAVAVATS
SVAAPAAPLSEYTQKKIYVSNVGAELDPRKLLAFFARYGEIEEGPLGLDKLTGKPKGFCL
FVYKSVESAKKALDEPHKNFEGHILHCQRAIDGPKPNKSQQHQHQQQQHHQNPNPHTVPF
QRTDNAGYVAGAPGTGPGHLMAPAAAGAGMGYNQGAAAAQALNPALGQAITALLASQGAG
LGLTNLLGTLGSAAAAVNPGVTAAAGHGMQGAYPSQTNISPGVIGGYGNQGGLQGGYPSQ
QMGQGSSGRGQHGAGQYGNMAPYMGH
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggcgaggaagcgaaagctcgattcccaaacccaatccggcgaaccaacaaccgaacct
ccacagaaacaacaacaacaacaacaacaacagcagcagcagctgcagcaacaagaaaac
gtcgaatacgaagaagtcgaagaagaagttgaagaagaagtagaagaagaagaggaagaa
gaagaagacgaagacgatgacgatgacgaagaacaacaacaacaactacaaaatgcggcc
aatcagacggctaattccacctccacatccgcctcagccggcgccgatggcgaagacgac
gacgacgacgacgagccgatacagaaccttctggaacctttcagtaaggaccagattata
aacctactccgcgaagcggcggataagcaccgtgacgtggcggatcggatccgaaaggtg
gcggatgaggacccggcccaccgcaagattttcgtccacggtctcggctgggacaccacc
gccgaaaccctaacctccgtgttcaagcagttcggcgagatcgaagattgcaaggcggtt
tgcgataagatctcgggtaaatccaagggttacggcttcatcctcttcaagagccgccgc
ggcgcccggaatgctcttaagcagcctcagaaaaagatcggaaatcggatgacggcgtgc
cagctggcgtcgattgggcctgttccgatgggtaattctgcggtggcggtggctacgtct
tcggttgcggcccccgcggcgccgttatcggagtatacgcagaagaagatatatgttagt
aatgttggggcggagttggatccaaggaaattgcttgctttctttgctaggtatggagaa
atcgaagaaggaccgctgggacttgataagcttactgggaagccaaaagggttttgtttg
tttgtttataagtcagttgagagtgctaagaaggctctagacgagcctcacaagaatttt
gagggccatatattgcattgccagagggctattgatggtcccaagccaaacaagtctcag
cagcatcaacatcagcaacagcagcatcaccagaacccgaacccacatactgtgccattc
caaaggactgataacgctggatatgttgccggtgcgcctggtactgggccgggtcatttg
atggctcctgctgcagccggagcgggaatggggtataatcagggtgctgcagcagctcag
gctttgaatcctgcacttggacaggccataaccgcgttgctggctagtcagggtgctgga
ttggggctgactaatttgttggggacgcttggttcggctgcggctgctgtaaacccgggt
gtgactgctgcagcagggcatgggatgcagggtgcttatccgagccagactaatattagt
cccggagtgattggagggtatggaaatcaaggaggattgcagggtggttacccgagtcag
cagatgggtcaaggcagttctggaagaggccagcatggagctgggcagtatggtaacatg
gctccttacatggggcactag

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