Castanea sativa (European chestnut): 142609918
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Entry
142609918 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142609918 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142609918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142609918
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142609918
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142609918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
142609918
NCBI-ProteinID:
XP_075637756
LinkDB
All DBs
Position
9:29673398..29695313
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AA seq
895 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNLVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYITLPLDKVES
LEDLVAIGPPSLVKGTPVLSLKTSLVASAPQVPATAAPNQQGVVQEQVEDSASQDSNSDT
VARTPPAKNSVIGSSAVSTPVGSHATPIVSGHNLSSVSTATVSLPGSASVRGAMENSGPV
NSSSPLSLPTAAKEEDSFPGRRSSPSLSDTGLVRGIGRGGLSSQPSASIPLSPSNVVPTN
GAVGAVPTASEMAKRNILVADERLGSSGMVQPLVSPLSNRIILPQAAKANDGTGLIDTSN
VGDPVTIGGRIFSPPVVAGMQWRTGSTFQNQNEAGQFRGRTEIAPDQREKYVQRLQQVQQ
QGHSTLLSMPPLSGGNHKQFSAQQQSPLLQQFNSQNSSVSPQAGLGLGVQTPGLNNVTSA
TLQQQPNNIHQQSNQQALMSGGPKDADVGHVKVEEQQQQQNLPDESTIDSTTGSGLGKNL
MNDDDLKTSHAIDTPAGVSGSMIEPAQVPRDIDLSPGQPLQTNQPSGSLGVIGRRSVSDL
GAIGDNLGGSTVNSGGTHDQSYNLQMLEASYYKLPLPKDSERARSYTPRHPAITPPSYPQ
VQAPIVNNPAFWDRLGLDVHNTDTLFFAFYYQQNTYQQYLAAKELKKQSWRFHRKYNTWF
QRHEEPKVATDEYEQGTYVYFDFHIASDDPHHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtcgtaaacttcagggcgagatagatcgagttctcaagaaggttcaagaa
ggcgtcgatgtgttcgacagtatttggaacaaggtttacgatacggataatgcgaaccag
aaggagaagttcgaggcggacttgaagaaagagattaagaaattacagaggtacagagac
caaatcaagacatggattcagtctagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctggtggatgctcgcaaacttattgagcgggaaatggaaagatttaagatc
tgtgaaaaggagactaagacaaaagcattttctaaagaaggactgggtcaacaacctaaa
actgatccaagggagaaggctaaatcagagacaagggattggttgaacaatttggttggg
gagttggagtctcagattgatagctttgaagctgagttggaggggctatctgttaagaag
ggaaagactaggccgccaagactgacacatttagagacatccattacccggcacaaggct
catattatgaagttggaactaatcttgaggctactggataatgatgaactgagtcctgag
caggttaatgatgttaaggactttttggaagactatgtggaacgtaatcaggaggatttt
gatgaatttagtgatgttgatgagctttacatcacgttaccattagacaaggtggagtct
cttgaagatttggttgcaattggtcctcccagtcttgttaagggtacacctgttcttagc
ttgaagacatcattggtagcatcagcacctcaagtgcctgccactgctgcacctaatcag
cagggtgttgtccaggagcaagttgaagattcagcttcccaggatagtaattctgatact
gttgcaagaactccacctgccaaaaatagtgtaattggttcttctgcagtatcaacacca
gttgggagtcatgcaacccctattgtttcaggtcataatttatccagtgtctccactgct
acagtgagccttccaggttcagcttctgttcgaggtgccatggagaacagtggtcctgtc
aattcttcttctcctttgagtctgcctactgctgcaaaggaagaagatagttttcctggc
cgcagatcatctccatctctttctgatactggacttgtaaggggcattggtagaggtggc
ctctccagccaaccatcagctagtattcctcttagtcctagcaatgtagttcctaccaat
ggagctgttggtgcagtccctacagcctcagaaatggcaaagagaaacattttagtagcc
gatgagagacttgggagtagtggcatggtgcagcctttggtttcccccctaagtaataga
attattttgcctcaggctgccaaggcaaatgatggaactggcttgattgatactagtaat
gttggtgatcctgtaactataggtggcagaatcttttcccctcctgtggtcgctggtatg
cagtggaggactggaagtacctttcagaatcagaatgaagcaggccaatttcgtggaaga
actgaaattgcacctgatcagagggagaaatatgtgcaacgccttcaacaagtgcaacaa
caaggtcacagtacccttcttagcatgccgcctctttctggaggaaatcataagcagttt
tctgcacaacagcaaagcccactcttgcagcagtttaattcccaaaactcatctgtctct
cctcaagctggtctgggacttggagttcagacaccaggtctcaataatgttacttctgcc
accttacagcagcagccaaataacatccatcagcaatctaatcaacaggcgttgatgtcg
ggtggtccaaaagatgctgatgttggccatgtgaaggtagaggagcagcagcaacaacaa
aatttacctgatgagtcaaccattgactctacaactggttctgggcttggaaagaatctc
atgaatgacgatgatttgaaaacctctcatgccatagatactccggctggggtatctggc
tctatgatagagcctgctcaagtgccaagagatattgatctctctcctgggcaacctttg
caaactaatcaaccttccggaagccttggtgttattggccgaagaagtgtttctgacctt
ggtgccattggtgataaccttggtgggtcaactgtaaactctgggggaacgcatgatcag
tcatacaatttgcagatgcttgaggcttcatattataaacttcctctacccaaagactcg
gaacgtgcgagaagttatactccaaggcaccctgctattactcctcctagctatcctcaa
gtacaggcgccaattgttaataatcctgccttctgggatcgattaggtcttgatgttcac
aacactgatacgctgttctttgcattttactatcaacagaacacttatcaacaatatttg
gctgcgaaagagttgaagaaacaatcttggagatttcacaggaaatataacacatggttt
caaagacacgaggagccaaaagtggccacagatgaatatgaacaggggacgtatgtgtac
tttgattttcatattgccagtgatgacccacatcatggatggtgtcaaaggatcaagaca
gaattcactttcgagtacaactatcttgaagatgaacttattgtatag
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