Castanea sativa (European chestnut): 142610455
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Entry
142610455 CDS
T11266
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
142610455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142610455
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
142610455
mRNA cycle factors
Common to processing body (P body) and stress granule
142610455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
7TM_GPCR_Srt
Motif
Other DBs
NCBI-GeneID:
142610455
NCBI-ProteinID:
XP_075638379
LinkDB
All DBs
Position
9:complement(38074041..38082063)
Genome browser
AA seq
986 aa
AA seq
DB search
MTVLMDNSLVSSRDRVQRLYNKNLELENKRRRLAQARVPSDPTAWQQMRENYEAIILEDH
AFCEQHDIEYALWQLHYRRIEELRAHLNAAVTANVSATSQGAKSSLRPDRITKIRSQFKT
FLSEATGFYHDLMLKIRAKYGLPLSSFPDDQENKMVKSKGGNKSAEMKKGLISCHRCLIY
LGDLSRYKGLYGEADSKSRDFAAASSYYLQASSLWPSSGNPHHQLSILASYSGDELLSIY
RYFRSLAVDNPFSTARDNLIIAFEKNRQSFSQLLGDGKASTIKAAHVRTPGKGRGKGGAV
RPLKDDKTDASFVKEIQSSIPDTFKAFSIRFVRLNGVLFTRTSLETFVDVFSVVISDFLE
LLSSGQEDVYNFGSSAAENGLMIVRLISILIFTVYNVNRESENQSYAEMLQRSVLLQNAY
TATFEFMGHILQRCMQLHDPTESYLLPGVLIFLEWLACHPEIAARSEVEEKEATARSSFW
NNCISFLNKLLSSGFMSINEDKDETCFFNMSRYDEGEIANLFALWEDYELRGFLPLVPAQ
MILDFSRKQVGSDGSDKEKKARFQRIIAAGKSLVSVVRVGQEYMYFDPRLKNFAIGAEPQ
ISDDFGLPSSLEMPASNGSEQEPREKKMNVGVFPPKAQLYTEGEEEDEVIVFQPFVAYKH
ANFIDPELSSYDALVPGGNDSQGDMGSCDVSVSAPLEGRVSGNALDSNLGPNALNAQLGP
PTSLATILPQHVQSFQPSTSKWLLEQQARLANGMNNLNRTENGVVKPGFREHFGVLQHAA
LSLPFPHSVNTSSGNEFAQGFDAGIPSKFDSIMSTGAGFDSLSLNPSSTLAASLRKNPVS
RPLRHFGPPPGFKPVAPKLEDESLSDTTLKDETSQLDDYRWLDGYQMPSSANCTRFDNSI
NHTPQSYHQASKGNMGMISFPFPGKRVPSSQVQVENQMNWQEYQAPDPLKAYQGLHQQKT
IKMNQDSIPPPKQYQGQSLWDDQFFV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgacggttctaatggataattctttggtttcatcgagggaccgcgttcaacgtctttac
aacaagaatcttgagttggagaataagcgtaggagattggcccaagcgagagttccctca
gatcccactgcctggcaacagatgcgggagaactatgaagcaattattcttgaagatcat
gctttctgtgaacaacatgatatagagtatgctctatggcaattgcattacaggagaatt
gaggagctccgtgcacatcttaatgctgctgtgactgcaaatgtttcagccacttcccag
ggtgcgaaatcttctttaagacctgatcgaatcacaaaaatacgctctcagtttaaaacc
tttctttctgaagcaactggattttatcatgatctgatgttgaaaatcagagcaaagtat
ggtttacccctgagttcttttccagatgatcaagagaataagatggttaagtctaaaggt
ggaaataaatctgctgagatgaagaaaggcttgatttcttgtcatcgttgtctgatttat
ctgggtgacctatcgcgttataaaggtttatatggggaagctgattccaaaagtagagat
tttgcagccgcatcaagttactatttgcaagcttcttcactctggccttcaagtggcaac
cctcatcatcagctttcaatattggcttcctattccggggatgaattgttgtcaatctat
cgctattttcggagtctggcagttgataaccccttttcaactgcaagagataatttgatt
attgcatttgagaagaatcgacagagtttttcccagctgcttggagatggcaaagcttcc
acaatcaaggctgcacatgtgagaacgcctgggaaaggaagaggaaaaggtggagctgtg
cgcccattgaaagatgataaaacagatgcaagttttgttaaggaaattcaatccagtata
cctgatacatttaaagctttcagcattcggtttgtccgacttaatggtgtactctttact
cgcacaagcttggaaacatttgtagatgttttctctgtggttattagtgattttcttgag
cttctttcttctgggcaagaagatgtttacaattttggttcaagtgctgcagagaatgga
cttatgattgttaggcttataagcattctcatcttcacagtttacaatgtcaatagggaa
agtgagaatcaatcgtatgctgaaatgttacaacgttctgttcttcttcagaatgcatat
actgctacctttgaattcatgggacacatacttcagagatgcatgcagttgcatgatcca
acagaaagctatttacttcctggagtgctgatatttttggagtggctagcttgtcatcca
gaaattgcagctcgcagtgaagttgaggaaaaagaagctactgctaggtcatctttttgg
aataattgcatatcattcttgaacaagctcttgtcaagtggattcatgtccattaatgag
gacaaagatgaaacatgttttttcaatatgagtaggtatgatgaaggggaaattgctaat
ctgtttgcattgtgggaagactatgaattgagagggtttctccctcttgttcctgcacaa
atgattcttgatttttcacggaagcaagttggaagtgatggtagtgacaaggagaaaaaa
gctcgttttcagaggattatagcagctggcaagtctcttgttagtgtagttcgggttggg
caagaatatatgtattttgatccaaggttgaagaactttgctataggcgctgagcctcaa
atatccgatgattttgggcttcctagttctttggaaatgcctgcatcaaatggctcggag
caagaaccacgggagaagaaaatgaatgtgggagtttttccaccaaaggcacaattatat
acagaaggagaagaagaggacgaggttattgtttttcaaccatttgtggcttataagcat
gctaatttcattgatccagagttgtcttcttatgatgctcttgtccctggtggtaatgat
tcccagggtgatatgggaagttgtgatgtttctgtttcagctccacttgaaggtagagta
tcagggaatgcattagattcaaatttaggcccaaatgctctcaatgcacagttaggtcct
cccacatctcttgctaccattctgccccagcatgtgcaatctttccagccaagtacttca
aagtggctgcttgaacagcaagctcgtctggctaatgggatgaacaatttgaacagaaca
gagaatggggttgtgaaaccaggttttcgagaacattttggagttttgcagcatgcagca
ctgtcacttccttttcctcactctgttaatacaagttctggcaatgagtttgctcagggt
tttgatgctgggataccgtctaagtttgattcaattatgtctactggagccggctttgat
agtctctctctgaatccatcatcaaccttggcagcaagtttaagaaagaatccagtgagt
cggccactaagacactttggtcctccacctggatttaagcctgttgctccaaaactcgag
gatgagtccttgtctgacactactttgaaggatgagacctcacagttggatgattataga
tggctagatggatatcagatgccatcgtcagctaattgcaccaggtttgacaattccata
aatcatacaccacaatcatatcaccaagcaagtaagggcaatatggggatgataagtttt
ccatttcctggaaaacgagtcccatcatctcaagtccaagtggaaaaccagatgaactgg
caggaataccaggctcctgatcctctgaaagcataccagggactgcaccagcagaagact
attaaaatgaatcaggattccattccaccgccgaagcagtatcaaggacaatctctctgg
gatgatcagttctttgtgtga
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