KEGG   Castanea sativa (European chestnut): 142610594
Entry
142610594         CDS       T11266                                 
Name
(RefSeq) UBP1-associated protein 2C-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142610594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142610594
   03041 Spliceosome [BR:csaa03041]
    142610594
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     142610594
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     142610594
Spliceosome [BR:csaa03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    142610594
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 PHM7_cyt RL
Other DBs
NCBI-GeneID: 142610594
NCBI-ProteinID: XP_075638557
LinkDB
Position
9:26537286..26562125
AA seq 339 aa
MEDVKKRKVGEGVGNGETSEEEMRLLLDPLPKPQLVHILSKLGSQYPSIAEEIRSIASAD
PVHRKLFVRGLAWNTTSETLCAAFQVHGEIEEGAVISDKTTGKSRGYGFITFKHMESAHN
ALKAPSKMIDGRLAVCNLACEGLSGASTTPDLAQRKLYIGGLSPNITSEELLKYFEKHGD
IEEGSVAYDKDTNVSRGFGFVTYKTVEAAKKAIDDPNKILGGRNIIVKLADSHKGKSLQT
QLTTAVVPMALPMAAGYPQPGNAHVSTTPVAYTYPQTVASYPVSSYPSPPTAPAPYQAQP
QISYAPVTLKKESLGLPSTPMGIGCHLVWCVWKLFGWIR
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggaggacgtaaagaagagaaaggtaggagaaggagtgggaaatggagagacatctgaa
gaagagatgcgtttgttgcttgaccctctccctaagccccagctcgtccatattctctct
aaactaggctcccaatatccttcaattgcagaagaaattagaagtattgccagtgcagat
cccgtccatcgaaagctttttgttcgtggcttggcctggaataccacttcagaaaccttg
tgtgctgcatttcaagtgcatggagaaatagaggaaggtgctgtgatctctgacaaaaca
acaggaaaatcacgtggttatggtttcattactttcaaacatatggaatcagctcataat
gcattgaaagcacctagtaaaatgattgatggtcgattagctgtttgcaatctcgcttgt
gagggcttaagcggagcaagtacaactcctgatttggcccagaggaagctctacattggg
ggcttgtcaccaaacattactagtgaggagcttctcaaatattttgagaagcatggtgac
atagaagaaggttcagttgcatatgacaaggatacaaatgtgtctcgtgggttcggtttt
gttacatacaagactgtggaggctgcgaagaaggccatagatgatccaaacaagatcctt
ggggggaggaatatcattgtgaagcttgccgattcccacaagggaaaatccctgcagaca
cagttaaccacagcagtggttccaatggccttaccaatggcagctggataccctcagcct
ggaaatgcacatgtgagcaccactcctgttgcctacacttaccctcaaactgtagcatca
taccctgtttcttcttaccctagtcctcctactgcacctgctccataccaggcacaaccg
caaatttcctatgcaccagtcaccttaaagaaagaatcccttggactcccatcaacacca
atgggaattggttgtcacctggtttggtgtgtctggaaattatttggttggattaggtga

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