Castanea sativa (European chestnut): 142610636
Help
Entry
142610636 CDS
T11266
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142610636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142610636
Enzymes [BR:
csaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
142610636
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142610636
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142610636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
142610636
NCBI-ProteinID:
XP_075638616
LinkDB
All DBs
Position
9:complement(24013469..24024658)
Genome browser
AA seq
600 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPDSSPIEGHFLRYKWYRIQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
SEEEELFGRFNSSGSAASLSGSASATSLTNGSTPLYPAAVTQRSGGETWFEVGRSKTYTP
TADDIGHVLKFECVVVEAETKVPVGHVNTILTSRVIPAPSPSPRRLVPVNGVDVIGHLDS
DGRLSSTGTFTVLSYNILSDVYATSELYSYCPSWALSWPYRRQNLLREIVGYRADIVCLQ
EVQSDHYEEFFAPELDKHGYVGLYKRKTNEVYSGITNTIDGCATFFRRDRFSHVKKYEVE
FNKAAQSWTDSQLPSAQKKTALNRLFKDNVALIVVLEAKFSNQGADNPGKRQLLCVANTH
VNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPLH
PDLAADPLGILRPNSKLVHQLPLVSAYSSFARMGVGIGLEQQRRRLDPTTNEPLFTNCTR
DFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPRARR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctgcgcgtgcacctcccttctgatattcccattgtaggctgcgaactc
acgccctacgttctcctccgccgccccgacaagactgtcaccaccgacgatgtccccgat
tcctccccaatcgaaggccatttcttgaggtacaagtggtatcgcatacaaagtgataaa
aaagttgctgtctgtagtgtacatccatccgagcaagctacattgcagtgcctaggttgt
gttaaggccaaaattcctgttgccaaaagttaccattgctctcctaagtgcttctcagat
gcatggcagcatcatcgtgttctacatgaccgtgctgcaagtgctgtaaatgaaaatgga
agtgaagaggaggagttatttggccgcttcaatagctcaggatctgcagctagcttatct
ggttctgcgtcagctactagcttgacaaatggttcaacacctttgtatcctgctgctgtt
acacaaaggagtgggggtgaaacttggtttgaagttggtcgctctaaaacatatacacca
acagctgatgatattggtcatgttcttaagtttgaatgtgttgtagtagaggctgaaaca
aaagtacccgtggggcatgtcaacactatattaacttctcgtgtcattccagctccttcg
cctagtccacgtcgtttggttccagtaaatggagtagatgtgattggacatctagattct
gatggccgtctttcatccacaggaactttcactgtgctctcttacaacattttgtctgat
gtgtatgccacaagtgaactatacagttactgcccctcttgggctctttcttggccttat
cgtagacaaaatttgttaagagaaatagttggctatcgtgcagatattgtttgtcttcag
gaggttcaaagtgatcactatgaggagttttttgctcctgagctggacaaacacggttat
gttggtctatataagagaaaaacgaacgaggtttacagtggaattacaaatacaattgat
ggttgtgccacatttttccgtagagacagattttcacatgtcaaaaaatatgaggttgaa
tttaataaggctgcgcagtcttggacagatagtcaattgccaagtgcacagaagaaaact
gctttaaatcgattatttaaggataatgttgcactaatagtggttctggaagcaaaattc
agtaatcagggagctgataatcctgggaaacgccagcttctttgtgtggcaaatacacat
gtaaacgttcaccaagatttaaaggacgtaaaactgtggcaggttcataccctcctaaaa
ggattggagaaaatagctgccagtgcagacattccaatgttggtttgtggggactttaat
tcagttcctggaagtgctcctcatgcacttcttgctatgggaaaggtagatccattgcat
ccagacttggcagcagatcctctgggtatcctgcgtcccaacagcaagctggtgcatcag
ttgccacttgtcagtgcttactcatcctttgcaagaatgggtgttggtattggtttggag
cagcagagaaggaggttggaccccacaacaaatgaacccttatttacaaactgcactaga
gattttattggaacactagattacatattttacacagcggactctttgacggtggaatcc
ttattggagctcttggatgaggagagcttgaggaaagacactgcacttccttctccagag
tggtcctccgatcatattgcactcttagcggaatttcgctgcatgcctagagctagacgt
tga
DBGET
integrated database retrieval system
