Castanea sativa (European chestnut): 142610704
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Entry
142610704 CDS
T11266
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
142610704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csaa03036
]
142610704
Chromosome and associated proteins [BR:
csaa03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
142610704
SWR1 complex
142610704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
142610704
NCBI-ProteinID:
XP_075638724
LinkDB
All DBs
Position
9:complement(25710497..25734825)
Genome browser
AA seq
2070 aa
AA seq
DB search
MASKGPRCKLDHETRAKRQKALEAPKEPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
RKVALRASKGMLDQATKGEKKMREEEQRLRKVALNMSKDVKKFWMKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDTHKPVQNPATPDRMTIKCKEVDEIDVDES
PEFNFESESNAADMDDDYDIRSEDESEDDEHTIEEDEALITEEERQEELTALHNEVDLPL
EELLRRYTTGEVSRESSPEKGEDGAEPLSGESTPETDEDGVEPTIMADDHGKGKVNDLST
VNEIDTSYSVTSVEATGRRCGGSNGDVSVLENHVLEIEMCQASDPSKDAGKSAKDHMLYD
FSDEQEDGDFVLAAGEEKDDEATLSEEEELAKEDSIHPMDEIALLQKEGEIPVEELLARY
KKGFNDDEVTDDESDYASALSDNLMDSPAHEGIQLTQQATSMDKDVETGECQSVANSPAE
VQQAGSHEKTEEERESENRIADAAAAARSAQPTGNTFSTTNVRTKFPFLVKHPLREYQHI
GLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWET
EFLKWCPAFKILTYFGSAKERKYKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLI
LDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFK
DWFSNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKR
QRNLYEDFIASSETQATLASANFFGMISVIMQLRKVCNHPDLFEGRPIVSSFDMTGLDIQ
LSTSVCSMPSPCPFYNVDLKGLGFLFTHLDFSMNSWESDEVKAIATPSSLIKECTDLCNL
EEIGPGYRHRKGLHGTNIFEDIRKAIVEERLREAKERAAAIAWWNSLRCEKKPMFSTTLR
EILTVKHPVYDIHLQKANPLSYMYSSKLADIVLSPVERFQRMLDLVESFMFAIPAARAPP
PVCWCSKSVTSVFLHPTYKQKCSEMLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQEL
AILLRKLKSEGHRALIFTQMTKMLDLLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTN
PKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLIS
ESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLPIKNLQKEKINN
NGNEVSVSNADVEAALKFAEDEADYMALKKLEQEEAVENQEFTEEAIGRMEEDEYVNEDD
LKVDEPVDQGGWITTANKETGMILAGNNPNEERAPAIASKEDDVDMLADVKQMAAAAAAA
GQEISSFENQLRPIDRYAIRFLELWDPIIDKAAVESQARFEETEWELDRIERYKEEMEAE
IDEDEEPLVYERWDADFATEAYRQQVEALAQHQLMEELECEAKEKEDAEDDKCDSMNRNE
KQSDLKPKSKKKPKKAKYKSLKKGSLASELKPAKEESATDRMSIDDENISHEVVTSSENF
SSVKKKRKKAETTLDCEQGKTSKKKSKKLKKTPPEICPLDLDSNLSGMQHDEPMDPKPCE
SVVDVEQKSTSRSRMGGKVSITTMPVKRVLMIKPEKLKKANVWSRDCVPSPDFWLPQEDA
ILCAMVHEYGPQWSLVSETLYGMTAGGFYRGRYRHPVHCCERFRELVQRYVLAAPDNPNN
EKVSNAGSGKALLKVTEDNIRLLLDVAAEQPDRELLLQKHFTALLSSVWKMKSRVDLTSS
CSSSRNGLYRSLTWNSMQEPPEKLKFTNLGESSRMLKRALLDVSLSEDTVSPSNQGCETS
SVTEQLEINLEFQKELEDSMVPLPSFISLSISGADPPPSVSKASGEDHHFKASQNVAENR
FRAAARACVEDSVGWVSSVFPTNDVRNRSASKLPSLGKHKLSISDSMKPSKSRFKRSSME
HTEMPHLIAEPVLEPLPAAAPKDPDLIFDLTQPIIPDVGIDVVGSNVTHGTDMELSMEME
SYEEVPHCYVPGLISGLDDCPLLPEYTDIG
NT seq
6213 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaaaggtccaaggtgtaagcttgatcatgagacaagggctaagcgtcaaaag
gcacttgaagctcccaaagaacctcgacgccctaaaacccattgggatcatgttttagaa
gagatggtttggctgtccaaggacttcgaatcagagaggaaatggaaattggcacaagca
aggaaggtcgctttaagagcgagcaagggcatgttagatcaggctacaaagggagaaaag
aaaatgagggaagaggagcagcggttgagaaaagttgcacttaatatgtcaaaggatgtg
aagaaattctggatgaaaatagaaaagctggtgctttacaagcatcagatggagcttgat
gagaaaaagaaaaaggcacttgataagcaacttgagtttctgttggggcaaactgagagg
tactcaacaatgctagcagaaaatctcgtggatactcataaaccagtgcaaaaccctgct
acaccagatcgaatgactattaaatgcaaagaagtggatgaaattgatgttgatgagtca
ccagaatttaattttgaatctgagtcgaatgctgcggatatggatgacgattatgatata
cgatctgaagatgagtcagaagatgatgagcacacaattgaggaagatgaggcccttata
actgaagaagaaaggcaagaagaattgacagctttgcacaatgaagtagatcttccacta
gaggagctgctcagacgatataccacgggggaagttagcagagaaagtagtccagaaaag
ggtgaagatggggctgaaccacttagcggagaaagtactccagaaacggatgaagatggg
gttgaaccaaccattatggcggatgatcatggcaagggcaaagtaaatgatctttcaaca
gtcaatgagattgacacaagctattcagtaacttcagttgaagccactggtcgtcgttgt
ggtggaagtaatggtgacgtatctgttttggaaaaccatgtattagaaattgagatgtgt
caagctagtgatccatcaaaagatgctgggaagtctgccaaagatcatatgctatatgat
tttagtgatgaacaggaagatggtgactttgttcttgctgctggcgaagagaaggatgat
gaggcaaccttgtcagaggaggaggagctggcaaaagaagattcaatccaccccatggat
gagattgcattactgcagaaggagggtgaaatacctgtagaagaattgcttgcaaggtat
aaaaagggcttcaatgacgatgaagttacagacgatgaatctgactatgcgtctgcttta
tcggacaatctcatggattctccagcccatgaaggcattcaacttacacagcaagctact
tctatggacaaagatgttgaaactggtgaatgccagtcagttgcaaattctccggcagaa
gtacagcaagcaggatcccatgaaaaaacagaggaggagagggaaagtgagaatagaatt
gctgatgcagcagcggctgcaagatcagcacagccaacaggaaacaccttctccacaacc
aacgtgcgtactaagttcccgtttcttgtgaagcatcctcttcgtgagtatcaacatatc
ggcttggattggcttgttacaatgtatgagaaaagactcaatgggattctagctgatgaa
atggggcttggaaagacgattatgacaatagctctgcttgcacacctggcgtgtgaaaag
ggaatatggggtcctcatctcattgttgtccccacaagtgtcatgcttaattgggagact
gagtttctgaaatggtgtcctgcttttaaaattttaacttattttggaagtgcaaaagag
cgcaaatataagaggcagggctggttgaaacctaactcgtttcatgtgtgcataacaact
tacagactggttattcaagattcaaaagttttcaagcgcaagaagtggaaatacttgatt
ttggatgaagctcatctgattaaaaattggaagtcacaaagatggcagactcttttgaac
ttcaattcaaaacggcgtattttattaactgggacaccgctgcagaatgatctcatggaa
ctttggtctctaatgcattttttaatgccccatatctttcaatctcatcaggagttcaag
gactggttcagtaatccaatatcaggaatggttgagggacaagagaaagtaaataaagaa
gttgtggatcgtcttcataatgttctccgtccattcatactccgtcgcttgaagcgagac
gtggagaagcagctgcctatgaaacacgaacatgtcatttactgtagactgtcaaagagg
cagcgtaacttgtatgaagacttcattgcaagctcggaaacacaagctactcttgcaagt
gccaacttttttgggatgattagtgttatcatgcaacttcgcaaagtttgcaatcatcca
gacttatttgagggtcgtccaattgttagttcatttgatatgactggtcttgacatccaa
ttgagtacatctgtttgttcaatgccttctccatgcccattttataatgtagaccttaag
ggtttgggatttttatttactcatcttgactttagcatgaattcttgggagagtgatgaa
gtgaaagccattgctaccccctcaagtttaatcaaggagtgcaccgacttgtgtaaccta
gaagaaataggacctggatatagacatcgaaaagggttgcatggaactaatatttttgaa
gatattcgtaaggcaatcgtagaggagagactaagagaagcaaaggagcgggcggcagct
attgcatggtggaattccttgaggtgtgagaaaaaacccatgttctctacaacacttagg
gaaattttgacagtgaagcatcctgtttatgatattcatcttcagaaggccaaccctttg
tcctacatgtactcctcgaagcttgctgacattgtcctctcaccagtggagcgattccag
agaatgttggaccttgttgaaagttttatgtttgcaatacctgctgcacgggccccacca
cctgtttgctggtgcagtaaatctgtgacttctgtgtttctgcacccaacttataagcag
aaatgttctgaaatgttgtcgccccttctatcacctatcagacctgcaattgtccggagg
caagtatatttcccagacaggcgacttatacagtttgactgtgggaaattgcaggagctt
gcaatattgctcaggaaattaaaatcagaaggtcatcgagcattaatattcacccagatg
acaaagatgcttgatctcttggaggctttcattaatttgtatggttatacatacatgcgt
ttagatggatcgactcagccagaggagaggcagaccttaatgcaacgctttaacacaaac
ccaaagttttttctcttcatcttgtcaactcgtagtgggggtgttggtatcaacctagtt
ggggcagatacagttatcttttatgatagtgactggaatcctgctatggatcagcaagct
caggatcgatgccaccggataggacagacacgtgaagttcatatttatcggctaatcagt
gagagcaccattgaagagaatattttaaagaaagctaatcagaagcgtgcccttgatgat
ctagttatacagagtggaggctacaacacagaattcttcaaaaagcttgatcccatggaa
ctgttctcaggtcatagaacacttccaatcaagaatttgcagaaggaaaagattaacaac
aatggcaatgaggtttctgtgtctaatgcagatgtggaggctgctttgaaatttgcagaa
gatgaagctgactacatggcattgaagaaacttgaacaggaagaagctgtggagaaccaa
gagtttacagaagaagccattgggaggatggaagaggatgagtatgtaaatgaggacgat
ctgaaggttgatgagcctgtagatcagggtggctggatcacaactgcaaataaagaaact
gggatgattttggctgggaataatcctaatgaagagagagctccagctattgctagcaaa
gaagatgatgttgacatgctggctgatgtcaaacaaatggctgcagcagcagctgccgct
ggacaagaaatctcatcatttgagaatcagctacgtccaatagatcgatatgcgattcgt
tttctggaattgtgggatcccattatagacaaggcagcagtggaatctcaagctaggttt
gaggagacagaatgggaactggaccgcatcgagaggtataaggaggaaatggaagctgag
attgacgaagatgaggaaccccttgtatatgagagatgggatgcagattttgcaactgag
gcatatcgccagcaagttgaggccttagctcaacaccagttgatggaggagctggaatgt
gaagctaaggagaaggaggatgcagaagatgacaaatgtgattcaatgaacaggaatgaa
aagcaaagtgatctgaaacccaagtctaaaaagaagccaaagaaagccaagtacaaatct
ctgaagaaaggatctttagcttctgaattgaaacctgcaaaagaagagtcagcaacagac
cgaatgtcgatagatgatgagaatatttctcatgaggtggtcacctcgtccgaaaatttt
tcaagtgtgaagaaaaaacgtaagaaggctgaaactacactggattgtgaacaaggaaaa
acctcgaaaaagaagtctaagaaactcaagaagactccccctgaaatatgtccattagat
ttagattccaacctgtcaggcatgcagcatgatgaacctatggatccaaaaccatgtgaa
agtgtggttgatgtcgagcagaaatcaacaagccggagcaggatgggagggaaagtatcc
attactaccatgcctgtaaagagggttttaatgataaaaccagagaaattaaagaaggca
aatgtttggtcaagagattgtgttccctctcctgatttttggttgccacaggaagacgca
atattatgtgctatggttcatgaatatggccctcagtggagcttggttagtgaaactctg
tatgggatgactgctggtggattttataggggaagatatcgccatcctgtccattgttgt
gagagatttagagaacttgtccagagatacgttttggctgcacctgacaatcctaataat
gaaaaggtcagcaatgcaggctctgggaaggctcttctcaaagtaacagaggataacatt
cgcttgcttttagatgttgctgctgagcagccagacagagagttactccttcagaagcac
tttactgccctcctttcttcagtctggaaaatgaagtcacgtgttgaccttacttcaagt
tgttcatcatcccgaaatggtctatataggtctcttacttggaactccatgcaagaacct
ccagaaaaactgaaatttactaatttaggagagagtagcaggatgttaaaacgtgcactc
ttggatgtctctctatcggaagacacagtctccccctccaaccaagggtgtgaaacatca
tcagttaccgaacaattggagataaatctagaattccagaaagaactggaagactccatg
gttcctttgccctcttttataagtttatcaatatctggggcagaccctccaccatctgta
agcaaggctagtggagaagatcatcattttaaagcttcccaaaatgtggctgagaaccgt
ttcagggctgctgcaagagcttgtgttgaagatagtgtgggatgggtatcctctgtattc
ccaaccaatgatgttaggaatagatcagcatccaagttaccatcgttgggaaagcacaaa
ctctccatctctgactcaatgaagccttctaaatcacggttcaaaagaagttcaatggag
cataccgagatgccccaccttattgctgagccagtattggaaccattaccagcagctgca
ccgaaggatcctgatttaatctttgacctgactcaacctatcataccggatgttggaatt
gatgttgtgggaagtaatgtaactcatggcacagatatggagctttctatggaaatggag
agttatgaagaagtcccacattgctatgttcctggcttaatctctggcctcgatgattgt
ccattgttgcctgaatacactgacattgggtag
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integrated database retrieval system
