KEGG   Castanea sativa (European chestnut): 142611110
Entry
142611110         CDS       T11266                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    142611110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:csaa03021]
    142611110
Enzymes [BR:csaa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     142611110
Transcription machinery [BR:csaa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     142611110
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002
Other DBs
NCBI-GeneID: 142611110
NCBI-ProteinID: XP_075639262
LinkDB
Position
1:complement(19236686..19249794)
AA seq 1193 aa
MGASSDAKEEIGMSSKGEAYSNGVEMDTDDDEFLESTSIHELGEKFLKIFCKKAAVSFFN
EYGLISHQINSYNDFIKNGIQKAFDSFGEIIVEPGFDPSKKGEGEWRYASVRFGKVTLDP
PIFWGGEGNVKEFNMLPRHARLQNMTYSARMKVNIDVQVYTQKLVRSDKFKTGKDQFVDR
EILSEENRDIFFGRIPVMVKSDLCYMKGAENADCDFDHGGYFLIKGAEKTFIAQEQTSMR
RLWVLNNQGWTVAYKSEVKKHRLIVKLVGVPKVEDIKGGEQVLTVYFLSTEIPIWILFFA
LGVSSDREVIDLIDYDSEDASILNILFASIHDANENCGGFRRGKAALNFVEKCVKNTKFP
PGEAIEECINMYLFPSLQSSKQKARLLGYMVKCLLQAYNGQRKSDNRDDFRNKRFDLAGE
LLERELKVHIAHARRRMQKALQRDLYGDRDIRQIEHYLDASIITNGLSRAFSTGAWSHPF
KRMERISGVVATLGRTNPLQTMAEMRRTRQQVQYTGKVGDARYPHPSHWGRVCFLSTPDG
ENCGLVKNLAITGLVSTNILEPVTSKLFDCGLEELGDDAPLGKKYKVFLNGEWVGVCTDS
ISFVQELRYKRRRKKLPHQVEIKRDEQHEEIRIYSDAGRILRPLLVVENLGKIKGDKGEN
YTFQSLLDKGIIDLIGTEEEEDCCTAWGIKYLFMEKGGKSSDKYTHCELDMSFLLGLSCG
LVPFANHDHARRVLYQSQKHSSQAIGFTTTNPNIRVDTLSHQLHYPQRPLFRTMTSDCLG
KPGYPLGHHGMLPKPEFYNGQNAIVAVNVHLGYNQEDSLVMNKASLERGMFRSEHIRSYK
AEVDNKDSLEKKRKPEDFVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESG
TDHSIKLKHTERGMVQKVLLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE
SQENFPFTIQGIVPDVVINPHAFPSRQTPGQLLEAALGKGIACGGSMRYATPFSTVSVDA
ITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLTHMSEDKVKFRNTGPVHPL
TRQPVADRKRFGGIKFGEMERDCLIAHGASGNLHERLFTLSDSSQMHICQKCKNVANVIQ
RTVQGGRKIRGPYCRVCESVDDIVKVNVPYGAKLLCQELFSMGISLKFETRLC
NT seq 3582 nt   +upstreamnt  +downstreamnt
atgggggcgtcatcggatgccaaggaagaaataggcatgagtagtaagggtgaagcatat
tcaaatggggtggagatggataccgatgatgatgaatttctcgagtcgactagcatacat
gagttgggtgaaaagtttctgaaaattttttgtaagaaggcagcagtttcattcttcaat
gagtatggtctgataagccaccaaatcaactcatacaatgacttcatcaagaatggtatc
cagaaggcctttgactcttttggtgagatcatagttgagcctggattcgacccatcaaag
aagggggagggtgagtggcgctacgcttcagttaggtttgggaaggtgacccttgatccg
ccgatcttttggggtggtgaaggaaatgtgaaggagttcaacatgcttcctaggcatgcc
cggcttcagaacatgacatactcagcaaggatgaaagtgaatattgatgttcaggtatat
acgcagaaactagtcagaagtgacaagtttaaaactgggaaggatcaattcgttgatagg
gagatcctaagtgaagaaaacagggatattttttttggaaggattcctgtgatggtgaag
tctgacctgtgctacatgaaaggagctgagaatgctgattgtgatttcgatcatggaggc
tactttttaattaagggtgcagagaagacatttattgcacaagagcagactagtatgagg
aggctttgggttttgaacaatcaaggttggactgttgcatacaagtctgaagtgaagaag
cacaggttaattgtgaagctagtgggggttcctaaagttgaagacattaaaggaggagag
caagttcttactgtatatttcttgtcaacagaaatccctatatggattttgttttttgct
cttggggtatcatcagacagagaagtcatagatcttattgattatgacagtgaagatgcc
agcatattgaatattctatttgcctcaattcatgatgccaacgagaactgtgggggcttc
cgcagagggaaggcagctctaaattttgtagaaaaatgtgtaaagaacaccaaatttcct
cctggggaagctatcgaagagtgcattaacatgtatctgtttcctagtctccaaagctca
aagcaaaaggctcgtcttcttgggtatatggtgaagtgcctcttacaggcttataatggc
caaagaaaatctgataacagggatgattttagaaacaaaaggtttgacttggctggtgag
ctgcttgagcgagagctgaaagtgcatattgcacatgcacggaggcgcatgcagaaggct
ctgcagagagacctttatggagatcgtgatatacgtcaaattgaacactacctggacgct
tccataatcaccaatggcctttcaagggccttctcaactggtgcatggtctcatcctttt
aagaggatggaaaggatttctggtgtggtggcaacactagggcgaacaaacccattgcag
acgatggctgaaatgaggagaacacgccagcaggttcagtacacagggaaggttggagat
gccagatatccacatccttctcactgggggagggtatgttttctctctactccagatggt
gaaaattgtgggcttgtaaaaaatttggccatcaccggactagtaagcacaaacatattg
gagcctgtaacttccaaattgtttgattgtggtttggaggaattgggggatgatgctcca
ttgggtaaaaagtataaagtatttttgaatggggaatgggttggtgtctgtacagattcc
atttcatttgttcaagagcttaggtataagcgacgcaggaagaaattgccacatcaggtg
gagattaaaagagatgaacaacatgaagaaatacgtatatattctgatgctggaaggatt
ttacgtccacttttagttgtagagaatttaggaaagattaaaggagataaaggtgaaaat
tacaccttccaatctcttttggacaagggaatcattgatttaatcggaactgaagaagaa
gaagattgttgcactgcatggggcattaaatatctgttcatggaaaaaggagggaagtca
tctgataagtatacccactgtgaacttgacatgtcgtttttattaggcttgagctgtgga
cttgtcccatttgcaaatcatgaccatgcaaggagggtcctttatcaatctcagaagcac
tcttcacaggctattggctttaccacaacaaatcctaatattagagtggatactctgtct
caccaattacattatccgcaaaggccactttttcgtacgatgacttctgattgtcttgga
aaaccaggatatcctcttggtcatcatggaatgctgccaaagcctgaattctacaatggc
cagaatgctattgtggcagtcaatgttcacctagggtacaaccaagaggattccttggtg
atgaacaaggcttctctggagcgtggaatgtttcggtctgagcatatcagaagttataag
gctgaggttgacaacaaggactcattagaaaaaaagcggaagcccgaggattttgtaaac
tttggaaagattcaaagtaagattggacgtgttgacagccttgatgatgacggtttccct
ttcattggtgcaaacctgcagagtggtgacattgtcatagggaggtgtgcagaatctggg
actgatcacagtataaaactgaagcacactgaaaggggcatggttcagaaagttttgctg
tcttctaacgatgagggaaagaattttgctgtggtgtccctgagacaggttcgttctcca
tgtcttggagacaagttttcaagcatgcatggtcagaagggtgtcttgggttttttggaa
tctcaagagaacttccccttcacaatacaagggatagttccagatgttgtaataaatccc
catgcatttccttcacgacaaactccgggtcagctcctagaggctgctttagggaaggga
atagcctgtggtggttcaatgagatatgccacccctttctccacagtctctgttgatgcc
atcactgaacagcttcatagggctggattttcaagatggggaaatgagagagtatacaat
ggacgaactggtgaaatggttcgttccctcatatttatgggtccaacattttatcagcgt
ctgactcacatgtccgaggacaaagtaaaatttcgcaacacaggtccagtccatcctctt
acccgacaaccagtggcagatcggaagcggttcggtgggatcaagtttggtgagatggag
cgtgactgccttatagcccatggtgcgtcaggaaacttgcatgaacgcctcttcacgctc
agtgactcctcccagatgcacatttgccagaaatgcaaaaatgttgcgaatgtgatccaa
aggactgtgcaaggtggccgtaagattagaggtccatattgccgggtttgtgagtcagta
gatgacattgttaaggttaatgtaccttatggggccaagttattgtgtcaggagcttttc
agcatgggcataagtctgaagtttgaaacacggctctgttga

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