Castanea sativa (European chestnut): 142611218
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Entry
142611218 CDS
T11266
Name
(RefSeq) putative pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa00040
Pentose and glucuronate interconversions
csaa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
142611218
Enzymes [BR:
csaa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
142611218
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
142611218
NCBI-ProteinID:
XP_075639380
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Position
9:complement(6777826..6783608)
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AA seq
478 aa
AA seq
DB search
MLPRTCIVLISLLCSFSPLGRAMLNLTLPGQHPNPEAVVQEVHRKVNASIARREMLQVSQ
KDQATCLTGNPIDDCWKCDPNWANNRQRLADCAIGFGQYAVGGKNGEFYLVTDSSDDDAV
NPKPGTLRYAVIQTEPLWIVFPSNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQF
ISNVIIHNIHIHHCHPSGNTNVRSSPTHYGYRTESDGDGISIFGSKDIWIDHCSLSHCKD
GLIDAIMGSTGLTISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRC
RRGYIHVVNNDYTQWEMYAIGGSGNPTINSQGNRYTAPLDPNAKEVTKRVDTEEGKWKGW
NWRTDGDIMVNGAIFVASGEGVEVKYEKAYSVEPKSAVLIDQLTMHAGALGVGGRDNNLG
MWSTGPNGGGTGLDSGPDYTDDWSGSSGPLLPSTSTFLSLLIALSCLLFYKIRPTFML
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgctcccaaggacctgcattgtcctaatttctcttctctgctcattttctccacttggt
agagcaatgctcaacctcactcttccaggccagcatcctaaccccgaagctgttgtccaa
gaagttcacaggaaggtaaatgcttctatagcaagaagggaaatgctacaagtctctcag
aaagaccaggccacatgcctaacagggaaccccatagatgactgttggaaatgtgaccca
aattgggccaacaacaggcagagactagcagattgtgcaattgggtttggccaatatgct
gtcggtggcaagaatggtgaattctaccttgtcactgactcctcagacgatgatgcagtg
aatcctaagccaggcacactaagatatgctgtgattcagactgaacctctatggattgtg
tttcccagcaacatgctcattaagctgtctcaggagctcatctttaatagctacaagact
cttgatggtcgaggggctaatgtgcacattgtgggtggtgggtgcattactctccagttt
ataagcaatgtcattatacacaacattcatatccaccattgccatccgtcaggtaatact
aatgtgcggtcgagcccaacccactacggctaccgcacagaatcagacggtgatgggatc
tcgatctttgggtcgaaagacatatggatcgaccactgttccctctcacactgcaaagat
gggctgattgatgcaattatggggtccacagggctcacaatatcaaacaattatttctcg
catcacaatgaggtgatgctgttgggccacagcgatgactatttgccagactcaggaatg
caagtgaccatagcattcaatcactttggtgaaaaattggtgcagagaatgccaaggtgt
agacgtggctatatccatgtggttaacaatgattacactcagtgggagatgtatgctatt
ggtggtagtggtaaccctaccattaatagccaaggcaatcgctacaccgctcctcttgat
cccaatgccaaggaggtgacaaagagagtggacaccgaggaaggaaaatggaagggatgg
aattggaggacagatggggatataatggtgaacggagcaatatttgtggcctcaggtgag
ggtgtagaggttaagtacgagaaggcttatagcgtggagcccaaatcagctgtgcttatt
gaccagctcactatgcatgccggcgcccttggagttggtggcagggacaacaacttggga
atgtggagtacaggacccaatggtggtggaacaggtttagactcaggcccagactacaca
gatgattggtcgggaagcagtggcccactgttaccttctacttcgactttcttatccctt
ttgattgcactatcatgtttgttattttataaaatacgtcccacttttatgttataa
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