Castanea sativa (European chestnut): 142611303
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Entry
142611303 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142611303 isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csaa03009
]
142611303
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
90S particles
Other 90S particles
142611303
Pre-60S particles
Other pre-60S particles
142611303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
HEAT_GCN1
NopRA1
Motif
Other DBs
NCBI-GeneID:
142611303
NCBI-ProteinID:
XP_075639524
LinkDB
All DBs
Position
9:complement(45476839..45498873)
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AA seq
1178 aa
AA seq
DB search
MPEPEEQAEELLKDGSDICQQLMDRYARSSAPQHRHLLATAAAMRSILASESLPLTPPAY
FAAAIDTAASNSDTLDSTAAAALLSFLSVVLPQVPAQEISAEKAGEAVSVLVNLVGKERG
SDGGLAVATVKAVVKCLGILLGFCDLENWDSLKLGFQTLLDFSIDRRPKVRRCAQDCLVK
AFKSFKSSGVNKAASKLVLSMLKNNMPLAVKLCSLKAVDGSKDDTLLKPEHLEVLYMLSV
VKISVPSLSTKVSSKVISEIVKLLNSKFSVLTRHVFQVIEVFFETSRVEVTVPETQKIVD
LLVSYVSSGDKNPVDTDISAATLLKRALDILHDGESSLWIRNLPLVCGCLAGLLSSEASV
ASLASSILKELLSHLADYKTLLTDKDKPSDDEGQESMEASAIKSVCLIFENALATYSGIP
DEHILGVITVLFLNLGEISYVFMKSIVLKLADLMILANGGTSNTDHLRKCIGSAVIAMGP
ERILTLLPISLHADLTCLNIWLIPILKDYVVEASLGYYIENVVPLAKSFEQASRKVKKLA
ISQDLQAHAHDLWGLLPSFCCHPTDTYQNVGALAKILITFLKEDSFMHKNIAVALQVLVY
QNKNVLSPKTESAEPNSSAEKDCVLQFRNVPTYSKKIATKNIKALTSCSTELLQALTNLF
VDSLPEKRSYLKDAIGCLASITDSSITKMILMSLLERFQFVDGEGEFEKLESDNQAMIDK
EQGNLSSTEKENQRCVIMELASSFVEGAKEDLIDLIYKFITHTFEVTNESGHCEAYHTLS
RILEEHAWFSSSRFVELIDLLLGLKSPVDIASLRSRFASLHILMIHALKMRLEEENTKAF
LILNEIILTLKEGNEEFRKAAYDILLKISASLKDSSAISDAPYHKLIGMIMGYLSGSSPH
IKSGAVSALSVLVYQDADICLSMPDIVPSLLSLLHTKVVEVIKAVLGFVKVLVSCLQAKD
LHRLLSDVVYEVLPWSSVSRHHFRSKVIVIMEIIIRKCGSAVVESVTPEKYKSFLKTVFE
NRHGKTSSKESDAVDTEMMLADSSMKASGSMLEKRKHKAMSSIPEENGSVEQRKRKRDKK
NNAYASIPSSNEHHLSSGSGGGLRAVQSARHSHNAKSMKGRSEGRQKKSKRNHDQIMTNH
EKRKEPTNTSKKGEATHIPNASKLSKHKVGRKRQKINK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaccagaagaacaagcggaggagcttttgaaagatggctccgacatctgccaa
cagctcatggaccgttacgccaggtcctccgccccgcagcaccgccacctcctcgcaacg
gccgccgccatgcgttccatcctcgcctccgagtctctccccctcaccccgcccgcctac
ttcgccgctgccatcgacaccgccgcttccaattccgacacgcttgactccaccgccgcc
gccgcgctgttgtcatttctgtccgtcgtgcttccgcaggtgccggcgcaggaaattagc
gccgagaaggcgggcgaagcggtgtccgtgctggtcaatttggttgggaaggagagaggg
agcgatggaggcttggccgtcgccactgtgaaggctgtggtcaagtgtttaggaattttg
ttagggttttgtgacttggagaattgggattctctcaaattagggttccaaactctcctt
gatttctcaatcgatcgccgtcccaaggttaggagatgtgctcaagattgtcttgtgaag
gcttttaagtcttttaagagctcgggtgtaaacaaggccgcgagcaagttggtactgtct
atgctcaaaaacaacatgcctttggcagttaaattatgtagtttgaaggctgtagatggg
tccaaagatgatacattgttgaaacccgaacatttggaggttctttatatgcttagtgta
gtgaagattagtgttccgagtctttctacaaaagttagttcaaaagtaatctcagaaata
gtgaagcttctgaattccaagttctcggtgcttacaagacatgtttttcaagttattgaa
gtgttttttgaaacatcgagagttgaagttactgttccagagacacagaaaattgtagat
ttgcttgtgtcgtatgtgtcttcgggagataagaaccctgtggacactgatatttctgca
gcaacattgttaaaacgtgctttggatatacttcatgatggagaatcaagcttgtggatt
aggaatcttcctctagtttgtggctgtttagcaggtcttctaagttcagaggctagcgtt
gcatcattggcttcaagtattttgaaagagttgctcagccatcttgcggattataaaact
ctcttgactgataaagataaaccatctgatgatgaaggtcaggagagcatggaagcaagt
gcaataaaatcagtttgtcttatctttgagaatgcccttgccacttatagtggaattcca
gatgagcatattttgggggtcataactgttttgtttctcaatcttggagaaatctcatat
gtctttatgaagagtatagtgcttaaacttgcggacttgatgatccttgccaatgggggc
acatccaacactgaccatcttcggaaatgtattgggtctgccgtaattgctatgggacca
gagcggatacttacacttttacctatctccttacatgcggacttgacttgtttgaacatt
tggttgatacctattttaaaagattatgttgttgaagcatcactagggtactatattgag
aatgttgtgccccttgctaaatcatttgagcaggctagtcgtaaagttaaaaagttagca
atcagtcaagatcttcaggctcatgcccatgacctgtggggactgctacctagtttttgt
tgccatcctactgatacttaccaaaatgttggagctttggctaaaatattaattactttt
ctaaaggaggactcctttatgcataaaaatattgctgttgccttacaggttcttgtttat
cagaacaagaatgttcttagccctaaaacagaatctgcagaacccaattcctctgcagaa
aaagattgtgtgttacagttcagaaatgtacccacttactcaaagaagattgcaacgaaa
aacatcaaggccttgacatcatgttccacagagttgctccaggctctaacaaacttattt
gttgattcacttcctgagaagcgttcgtatctaaaggatgccattggatgcctggcttct
attactgattcttctataaccaaaatgattctcatgtcattattggagaggtttcagttc
gtagatggtgagggtgaatttgaaaagttggagagtgataaccaagcaatgattgataaa
gaacaaggcaatctaagcagtacagagaaagagaatcagaggtgtgtgataatggagcta
gcatcttcttttgttgaaggagccaaggaggatcttattgatctaatctataaatttatt
acacacacttttgaggtaactaatgagtctggtcattgtgaagcataccacaccctgagc
agaattctggaggaacatgcttggttttcttcttcccgatttgttgagctgattgatttg
ttacttggtcttaagtctcctgtcgatattgcctctcttaggagtcgctttgctagtctc
cacatattaatgattcatgcattgaagatgaggttggaggaggagaacacaaaggctttt
cttattctcaatgagattatactcacattaaaggagggaaacgaagaattcaggaaagct
gcttatgatattctccttaagataagtgccagcttgaaagactcatcagctatttctgat
gcaccttatcacaaactgattggcatgataatgggctatctttctggttcatctcctcat
ataaagagtggggctgtgtctgccctgtcagtattggtttatcaggatgcagatatctgt
ctttcaatgcctgatattgtcccctcacttttatctttgctgcataccaaagtggtggaa
gttataaaagctgttttgggcttcgtgaaagtactagtgtcatgcttacaagccaaagac
ctacacaggcttctgtctgatgttgtctatgaagttttaccatggtcatctgtctccaga
catcattttagatcaaaggtcattgtcataatggagataataatacggaagtgtggttct
gcagtagttgagtcagttactccagagaaatataagagttttctgaagaccgtttttgag
aaccgccatggcaaaacgagttccaaagaatctgatgctgttgatacagaaatgatgctt
gcagattcatctatgaaggcttctggatccatgctggagaagaggaaacacaaagcaatg
agttctatacctgaggagaatggttcagtagaacaaaggaaaagaaagagagacaagaaa
aacaatgcctatgcctccatccctagctcaaatgagcatcacttgtcatctggtagtggt
ggtggtttaagagcagttcaaagtgctaggcattctcataatgcaaaatcaatgaagggt
cggtcagaaggaagacaaaagaagagcaagaggaatcacgaccaaattatgacaaatcat
gaaaagagaaaggagccaactaacacaagcaagaaaggtgaagccactcatatacctaat
gcttccaaattaagcaaacacaaggttgggaggaaaagacagaagattaataaatga
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